diff --git a/v3/UNRELEASED_CHANGELOG.md b/v3/UNRELEASED_CHANGELOG.md
index 1a7df62eff5..d8f70479ecb 100644
--- a/v3/UNRELEASED_CHANGELOG.md
+++ b/v3/UNRELEASED_CHANGELOG.md
@@ -23,6 +23,7 @@ After processing, the content will be moved to the main changelog and this file
 
 ## Fixed
 <!-- Bug fixes -->
+- Fix GTK4 Linux host dropping custom-protocol and file-association launch arguments in [PR](https://github.com/wailsapp/wails/pull/6000) by @midagedev
 - Correctly handle deleted lines and same-source corrections in changelog validation in [PR](https://github.com/wailsapp/wails/pull/5993) by @taliesin-ai
 
 ## Deprecated
diff --git a/v3/pkg/application/application_linux.go b/v3/pkg/application/application_linux.go
index db707e9e834..6ecd09c03f4 100644
--- a/v3/pkg/application/application_linux.go
+++ b/v3/pkg/application/application_linux.go
@@ -18,6 +18,7 @@ import (
 	"os"
 	"path/filepath"
 	"regexp"
+	"slices"
 	"strings"
 	"sync"
 
@@ -87,6 +88,28 @@ func (a *linuxApp) name() string {
 }
 
 func (a *linuxApp) run() error {
+	if len(os.Args) == 2 {
+		arg1 := os.Args[1]
+		if strings.Contains(arg1, "://") {
+			eventContext := newApplicationEventContext()
+			eventContext.setURL(arg1)
+			applicationEvents <- &ApplicationEvent{
+				Id:  uint(events.Common.ApplicationLaunchedWithUrl),
+				ctx: eventContext,
+			}
+		} else if a.parent.options.FileAssociations != nil {
+			ext := filepath.Ext(arg1)
+			if slices.Contains(a.parent.options.FileAssociations, ext) {
+				eventContext := newApplicationEventContext()
+				eventContext.setOpenedWithFile(arg1)
+				applicationEvents <- &ApplicationEvent{
+					Id:  uint(events.Common.ApplicationOpenedWithFile),
+					ctx: eventContext,
+				}
+			}
+		}
+	}
+
 	a.parent.Event.OnApplicationEvent(events.Linux.ApplicationStartup, func(evt *ApplicationEvent) {
 		if err := a.processAndCacheScreens(); err != nil {
 			a.parent.handleError(err)