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docs_dir: docs/
site_name: Soteria User Manuals
site_url: https://ua-data7.github.io/user-manuals
site_description: Soteria User Documentation
site_author: 'Soteria CyVerse Health'
# uncomment to show the github icon in the header with
# number of forks & stars
repo_url: https://github.com/ua-data7/user-manuals
edit_uri: edit/mkdocs-material/docs
# Copyright
copyright: 'Copyright © 2024 University of Arizona Data Science Institute, Arizona Board of Regents'
# Navigation Pane
nav:
- Soteria Documentation Home:
- index.md
- Logging in & Access Guides:
- access/index.md
- Obtaining Soteria Access via VPN: access/access_vpn.md
# - Accessing Soteria via macOS: access/access_mac.md
# - Accessing Soteria via Windows: access/access_win.md
- Soteria and the UArizona HPC System: access/access_hpc.md
- Data Transfer & Management:
- data_transfer/index.md
- Globus Data Transfer: data_transfer/Globus.md
- Training Modules & Tutorials:
- usage_guides/index.md
- CyVerse Health User Manual: usage_guides/CyVerse_Health.md
- Posit Connect Health Tutorial : https://ua-data7.github.io/rsconnect-tutorial/
# JavaScript for Intercom Widget
extra_javascript:
- javascripts/intercom.js
# logos
imgwidth: 7px;
theme:
highlightjs: true
name: material
font:
text: 'Open Sans'
code: 'Roboto Mono'
logo: 'assets/uarizona.png'
favicon: 'assets/favicon-ua.ico'
# setting features for the navigation tab
features:
- navigation.instant
- navigation.tracking
- navigation.tabs
- navigation.tabs.sticky
- navigation.indexes
- navigation.top
- toc.integrate
- toc.follow
# Default values, taken from mkdocs_theme.yml
language: en
palette:
- media: "main"
primary: 'white'
# Customization
extra:
social:
- icon: fontawesome/brands/orcid
link: https://orcid.org/
- icon: fontawesome/brands/github
link: https://github.com/cyverse/
- icon: fontawesome/brands/twitter
link: https://twitter.com/cyverseorg
- icon: fontawesome/brands/linkedin
link: https://www.linkedin.com/company/cyverse.org
- icon: fontawesome/brands/docker
link: https://harbor.cyverse.org/
- icon: fontawesome/brands/youtube
link: https://www.youtube.com/c/CyverseOrgProject
analytics:
provider: google
property: G-6WMK2Y07YW
# Extensions
markdown_extensions:
- admonition
- abbr
- attr_list
- def_list
- footnotes
- meta
- md_in_html
- toc:
permalink: true
- pymdownx.arithmatex:
generic: true
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
- pymdownx.highlight
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink:
repo_url_shorthand: true
user: squidfunk
repo: mkdocs-material
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:pymdownx.superfences.fence_code_format
- pymdownx.tabbed
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
extra_css:
- stylesheets/custom.css