cosy-examples/pyproject.toml at develop · tudo-seal/cosy-examples · GitHub

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[build-system]
requires = ["setuptools>=77.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "cosy-examples"
version = "0.1.0"
description = "Elaborate examples for the CoSy framework"
readme = "README.md"
requires-python = ">=3.11,<3.13"
license = "Apache-2.0"
authors = [
    {name = "CoSy Contributors"}
]
keywords = [
    "bayesian-optimization",
    "gaussian-process",
    "evolutionary-algorithm",
    "grammar-based-search",
    "cosy"
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Information Analysis",
]

dependencies = [
    "networkx==3.5",
    "numpy==1.26.4",
    "scikit-learn==1.6.1",
    "scipy==1.12.0",
    "combinatory-synthesizer @ git+https://github.com/tudo-seal/cosy.git",
    "grakel==0.1.10",
    "torch",
    "torchvision",
    "pandas",
    "matplotlib",
    "tqdm",
]

[project.optional-dependencies]
dev = [
    "mypy==1.15.0",
    "mypy_extensions==1.1.0",
    "pydot",
    "pytest",
    "hypothesis>=6.100",
    "pytest-cov>=4.1",
]
test = [
    "pytest",
    "pytest-cov>=4.1",
    "hypothesis>=6.100",
]

[project.urls]
Homepage = "https://github.com/tudo-seal/cosy-examples"
Repository = "https://github.com/tudo-seal/cosy-examples.git"
"Bug Tracker" = "https://github.com/tudo-seal/cosy-examples/issues"

[tool.setuptools.packages.find]
include = ["bayesian_optimization*"]
namespaces = false

[tool.setuptools.package-data]
bayesian_optimization = ["examples/simple_nas/data/*"]

[tool.pytest.ini_options]
testpaths = ["tests"]
pythonpath = ["."]
addopts = "-ra --strict-markers"
markers = [
    "slow: repeats suggest and observe for several rounds instead of a single call",
    "integration: exercises the whole optimization loop instead of a single component",
    "property: checks an invariant against inputs generated by hypothesis",
]

[tool.mypy]
python_version = "3.11"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false
ignore_missing_imports = true

[tool.ruff]
line-length = 100

[tool.ruff.lint]
# The selection covers syntax errors, import placement, the pyflakes checks and the
# import order. The remaining pycodestyle rules stay out until the examples are
# rewritten, because they flag long lines and ambiguous names that only the rewrite
# can settle.
select = ["E4", "E9", "F", "I"]
ignore = [
    # Unused imports and unused local variables are left standing for the rewrite of
    # the modules that carry them. Neither rule can be applied in bulk without risk.
    # Deleting an unused import can drop a name that another module imports from that
    # file, and deleting an unused assignment can drop a call that was made for its
    # effect.
    "F401",
    "F841",
]

[tool.ruff.lint.per-file-ignores]
# The example inserts the repository root into sys.path so that it runs from a plain
# checkout. The imports that follow that insertion are what this rule flags, and the
# one that needs it is the import of the package itself.
"bayesian_optimization/examples/simple_nas/simple_nas.py" = ["E402"]