pyAFQ/setup.cfg at main · tractometry/pyAFQ · GitHub

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[metadata]
name = pyAFQ
url = https://tractometry.github.io/pyAFQ
download_url = https://github.com/tractometry/pyAFQ
author = pyAFQ developers
author_email = arokem@gmail.com
maintainer = Ariel Rokem
maintainer_email = arokem@gmail.com
classifiers =
    Development Status :: 3 - Alpha
    Environment :: Console
    Intended Audience :: Science/Research
    License :: OSI Approved :: BSD License
    Operating System :: OS Independent
    Programming Language :: Python
    Topic :: Scientific/Engineering

license = BSD License
description = pyAFQ: Automated Fiber Quantification ... in Python
long_description = file:README.md
long_description_content_type = text/markdown
platforms = OS Independent

[options]
setup_requires =
  setuptools_scm>=8
  setuptools>=64

python_requires = >=3.11, <3.14
install_requires =
    # core packages
    scikit_image>=0.14.2
    dipy>=1.12.0,<1.13.0
    scikit-learn
    pandas>=2.2.3
    pybids>=0.16.2
    templateflow>=0.8
    immlib
    trx-python
    bibtexparser
    cuslines==2.2.3
    # efficiency
    numba
    osqp
    pydra
    ray
    # CLI interpretation
    toml>=0.10.0
    # plotly libraries
    plotly==5.12.0
    kaleido==0.2.1
    imageio[ffmpeg,pyav]>=2.0.0
    Pillow
    matplotlib
    altair

zip_safe = False
include_package_data = True
packages = find:

[options.extras_require]
dev =
    sphinx
    memory-profiler
    pytest
    pytest-cov
    flake8
    myst-nb
    sphinx_rtd_theme
    numpydoc==1.2
    sphinx-autoapi
    rapidfuzz
    moto>=3.0.0,<5.0.0
    pydata-sphinx-theme
    sphinx-design
    sphinxcontrib-bibtex
    wget
    ruff>=0.14.10
    pre-commit
    ipython
    jupytext
fury =
    fury>=2.0.0a7
fsl =
    fslpy
afqbrowser =
    AFQ-Browser>=0.3
plot =
    pingouin>=0.3
    seaborn>=0.11.0
    ipython
aws =
    s3bids>=0.1.7
    s3fs
    boto3>=1.14.0
nn =
    onnxruntime
gpu =
    cuslines[cu13]==2.2.3
    onnxruntime-gpu
all =
    %(dev)s
    %(fury)s
    %(fsl)s
    %(afqbrowser)s
    %(plot)s
    %(aws)s
    %(nn)s