From 9a3692ecfa7a332faa0ce540dbe3096d77367c2c Mon Sep 17 00:00:00 2001 From: Stefano Mangiola Date: Wed, 20 May 2026 16:54:32 +0930 Subject: [PATCH] Update DESCRIPTION to suggest SingleR package; modify Session 2 vignette to clarify instructions for repackaging on-disk objects. --- DESCRIPTION | 1 + vignettes/Session_2_Tidy_spatial_analyses.Rmd | 4 +--- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 15ff948..73b137e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -51,6 +51,7 @@ Suggests: Seurat, cowplot, scRNAseq, + SingleR, SPOTlight, SubcellularSpatialData, forcats, diff --git a/vignettes/Session_2_Tidy_spatial_analyses.Rmd b/vignettes/Session_2_Tidy_spatial_analyses.Rmd index 1299062..0bf3ea0 100644 --- a/vignettes/Session_2_Tidy_spatial_analyses.Rmd +++ b/vignettes/Session_2_Tidy_spatial_analyses.Rmd @@ -921,8 +921,6 @@ knitr::include_graphics(here("inst/images/cellNexus.png")) library(cellNexus) library(HDF5Array) - - brain_reference = # Query metadata across 30M cells @@ -941,7 +939,7 @@ brain_reference = brain_reference ``` -For large collection it is convenient (more efficient to query) to repackage the on-disl object in a consolidated file +DON'T RUN: For large collection it is convenient (more efficient to query) to repackage the on-disl object in a consolidated file ```{r, eval=FALSE} DelayedArray::setAutoBlockSize(size = 1e+09)