I am trying to run the refineSites function in a count matrix of counts in peaks with 215 samples as columns. For the first 70 samples, the function runs fine. However, for the next samples, this error pops up:
Error in while ((it <- it + 1) < limit && abs(del) > eps) { :
missing value where TRUE/FALSE needed
I have tried running the function in smaller counts matrix, but sometimes the error comes up and others don't. This is the command I am running:
counts.list<-refineSites(counts=counts,sites=gr, emtrace = TRUE, plot = TRUE,genome="hg38")
I was wondering if I am missing something or if you could help. Thank you
I am trying to run the refineSites function in a count matrix of counts in peaks with 215 samples as columns. For the first 70 samples, the function runs fine. However, for the next samples, this error pops up:
I have tried running the function in smaller counts matrix, but sometimes the error comes up and others don't. This is the command I am running:
counts.list<-refineSites(counts=counts,sites=gr, emtrace = TRUE, plot = TRUE,genome="hg38")I was wondering if I am missing something or if you could help. Thank you