-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathdataloader.py
More file actions
976 lines (821 loc) · 41.2 KB
/
Copy pathdataloader.py
File metadata and controls
976 lines (821 loc) · 41.2 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
import functools
import os
import numpy as np
import torch
from torch.utils.data import Dataset, DataLoader
from torchvision import datasets, transforms
from definitions import DATA_DIR, device, TensorType, Tensor
import random
import struct
import torch.utils.data as data
def seed_worker(worker_id):
worker_seed = torch.initial_seed() % 2**32
np.random.seed(worker_seed)
random.seed(worker_seed)
def get_dataset(loader):
x, y = [], []
for data, labels in loader:
if type(data) == Tensor:
data = data.to(device=device)
elif type(data) == list:
data = list(map(lambda x: x.to(device), data))
labels = labels.to(device=device)
x.append(data)
y.append(labels)
if type(x[0]) == Tensor:
x = torch.cat(x)
elif type(x[0]) == list:
x = [torch.cat([x[i][v] for i in range(len(x))]).numpy() for v in range(len(x[0]))]
y = torch.cat(y)
N = y.shape[0]
return x.type(TensorType).to(device), y.to(device)
def get_dataloader(args):
args = transformation_factory(args)
loader = get_dataloader_helper(args)
loader = get_dataloader_subset(loader, args)
return loader
def transformation_factory(args):
def transformation_factory_helper(transformation):
assert len(transformation.items()) == 1
d = {'normalize': transforms.Normalize}
name, args = list(transformation.items())[0]
t = d[name](**args)
return t
if "post_transformations" in args:
args.post_transformations = list(map(transformation_factory_helper, args.post_transformations))
return args
def get_dataloader_subset(loader, args):
N = args.N if args.train else args.Ntest
if N >= 0:
rng = np.random.default_rng(torch.initial_seed())
indices = list(rng.choice(range(len(loader.dataset)), N, shuffle=False, replace=N>len(loader.dataset)))
loader = DataLoader(torch.utils.data.Subset(loader.dataset, indices), batch_size=args.mb_size, pin_memory=False, num_workers=args.workers, shuffle=args.shuffle, worker_init_fn=seed_worker)
return loader
def get_dataloader_helper(args):
args_dict = vars(args)
if "post_transformations" not in args_dict:
args_dict["post_transformations"] = []
if "pre_transformations" not in args_dict or args_dict["pre_transformations"] == []:
args_dict["pre_transformations"] = []
if "train" not in args_dict:
args_dict["train"] = False
if "test" not in args_dict:
args_dict["test"] = False
if "val" not in args_dict:
args_dict["val"] = False
if "dataset_name" not in args_dict:
args_dict["dataset_name"] = args_dict["name"]
print(f'Loading data for {args_dict["dataset_name"]}...')
if args.dataset_name == 'mnist':
return get_mnist_dataloader(args=args)
elif args.dataset_name == "square":
return get_square_dataloader(args=args)
elif args.dataset_name == "complex6":
return get_complex6_dataloader(args=args)
elif args.dataset_name == "multivariatenormal":
return get_multivariatenormal_dataloader(args=args)
elif args.dataset_name == "3dshapes":
return get_3dshapes_dataloader(args=args)
elif args.dataset_name == 'cars3d':
return get_cars3d_dataloader(args=args)
elif args.dataset_name == 'norb':
return get_norb_dataloader(args=args)
elif args.dataset_name == "diabetes":
return get_diabetes_dataloader(args=args)
elif args.dataset_name == "ionosphere":
return get_ionosphere_dataloader(args=args)
elif args.dataset_name == "liver":
return get_liver_dataloader(args=args)
elif args.dataset_name == "cholesterol":
return get_cholesterol_dataloader(args=args)
elif args.dataset_name == "yacht":
return get_yacht_dataloader(args=args)
def get_mnist_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
"""MNIST dataloader with (28, 28) images."""
print("Loading MNIST.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
train_data = datasets.MNIST(path_to_data, train=args.train, download=True, transform=all_transforms)
if args.classes != -1:
idx = [(train_data.targets == label) for label in args.classes]
idx = functools.reduce(lambda x,y: x | y, idx)
train_data.targets = train_data.targets[idx]
train_data.data = train_data.data[idx]
train_loader = DataLoader(train_data, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
# _, c, x, y = next(iter(train_loader))[0].size()
return train_loader
def spiral(N: int, rand_state: np.random.RandomState, std, center=(0,0), b=1.0):
"""
Returns N 2d points drawing an Archimedean spiral of center and b specified from 0 to 8pi.
:param N: an even number of points
:param state: random seed
:param std: standard deviation of noise
:return: a pair of (N,2) matrices, the true dataset and the noisy one
"""
#assert N % 2 == 0
theta = np.linspace(0, 8*np.pi, N)
x = b * theta * np.cos(theta) + center[0]
y = b * theta * np.sin(theta) + center[1]
noise = rand_state.normal(0, std, 2*N)
x_n = x + noise[:N]
y_n = y + noise[N:]
return (np.vstack([x,y]).T, np.vstack([x_n,y_n]).T)
class Square(Dataset):
"""
Pytorch dataset for a 2D square. Returns a pair of points.
"""
def __init__(self, N:int, rand_state: np.random.RandomState, std: float):
self.x, self.x_n = square(N, rand_state, std)
self.x = torch.from_numpy(self.x)
self.x_n = torch.from_numpy(self.x_n)
def __len__(self):
return self.x.shape[0]
def __getitem__(self, i):
return self.x_n[i], 1
def circle(N: int, rand_state: np.random.RandomState, std, center=(0.0,0.0), radius=1.0):
"""
Returns N 2d points drawing a cirlce.
:param N: an even number of points
:param state: random seed
:param std: standard deviation of noise
:return: a pair of (N,2) matrices, the true dataset and the noisy one
"""
points = np.linspace(0, 2*np.pi, N)
x = radius * np.cos(points) + center[0]
y = radius * np.sin(points) + center[1]
noise = rand_state.normal(0, std, 2*N)
x_n = x + noise[:N]
y_n = y + noise[N:]
return (np.vstack([x,y]).T, np.vstack([x_n,y_n]).T)
class Complex6(Dataset):
"""
Pytorch dataset of one square, two spirals and a ring. Returns a pair of points.
"""
def __init__(self, N:int, rand_state: np.random.RandomState, std: float):
N_each = N // 5 + 1
if N_each % 2 != 0:
N_each += 1
self.N_each = N_each
square1, square1_n = square(N_each, rand_state, std, (-5,0.5), 4)
spiral2, spiral2_n = spiral(N_each, rand_state, std, (-4,-2), b=0.15)
spiral1, spiral1_n = spiral(N_each, rand_state, std, (5,0), b=0.2)
circle1, circle1_n = circle(N_each, rand_state, std, (14,0), 2.8)
circle2, circle2_n = circle(N_each, rand_state, std, (14,0), 1.2)
self.x, self.x_n = np.concatenate([square1, spiral1, circle1, circle2, spiral2])[:N], \
np.concatenate([square1_n, spiral1_n, circle1_n, circle2_n, spiral2_n])[:N]
self.x = torch.from_numpy(self.x)
self.x_n = torch.from_numpy(self.x_n)
def __len__(self):
return self.x.shape[0]
def __getitem__(self, i):
return self.x_n[i], i // self.N_each
def get_square_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
"""Square dataloader."""
print("Loading Square.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = Square(10000, np.random.RandomState(0), args.std)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_complex6_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
"""Square dataloader."""
print("Loading Complex6.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = Complex6(10000, np.random.RandomState(0), args.std)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_multivariatenormal_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
"""Multivariatenormal dataloader."""
print("Loading Multivariatenormal.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = MultivariateGaussian(10000, np.random.RandomState(0), args.std)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_norb_dataloader(args, path_to_data=DATA_DIR.joinpath('norb')):
"""SmallNORB dataloader with (64, 64, 3) images."""
if not path_to_data.exists():
print('Data at the given path doesn\'t exist. Downloading now...')
os.system(f" mkdir {str(path_to_data)};")
os.system(f" wget -O {str(path_to_data.joinpath('nips2015-analogy-data.tar.gz'))} http://www.scottreed.info/files/nips2015-analogy-data.tar.gz ;")
os.system(f"tar xzf {str(path_to_data.joinpath('nips2015-analogy-data.tar.gz'))}")
#from utils import Resize
from torchvision.transforms import CenterCrop, Resize
all_transforms = transforms.Compose([Resize((28)), transforms.ToTensor()])
train_data = SmallNORB(root=path_to_data, transform=all_transforms, train=True, download=True) #test set has different types
if args.classes != -1:
assert len(args.classes) == 5
idx = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.infos[:,i], label) for label in classs]) for i, classs in enumerate(args.classes) if classs != -1]
idx2 = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.infos[:,i], label) for label in np.unique(train_data.infos[:,i])]) for i, classs in enumerate(args.classes) if classs == -1]
idx4 = functools.reduce(lambda x,y: x & y, idx+idx2)
train_data.infos = train_data.infos[idx4]
train_data.data = train_data.data[idx4]
train_data.labels = train_data.labels[idx4]
norb_loader = DataLoader(train_data, batch_size=args.mb_size,
shuffle=args.shuffle, pin_memory=True, num_workers=args.workers)
_, c, x, y = next(iter(norb_loader))[0].size()
return norb_loader#, c*x*y, c
def get_cars3d_dataloader(args, path_to_data=DATA_DIR.joinpath('cars3d')):
"""Cars3D dataloader with (64, 64, 3) images."""
if not path_to_data.exists():
print('Data at the given path doesn\'t exist. Downloading now...')
os.system(f" mkdir {str(path_to_data)};")
os.system(f" wget -O {str(path_to_data.joinpath('nips2015-analogy-data.tar.gz'))} http://www.scottreed.info/files/nips2015-analogy-data.tar.gz ;")
os.system(f"tar xzf {str(path_to_data.joinpath('nips2015-analogy-data.tar.gz'))}")
class cars3dDataset(Dataset):
"""Cars3D dataloader class
The data set was first used in the paper "Deep Visual Analogy-Making"
(https://papers.nips.cc/paper/5845-deep-visual-analogy-making) and can be
downloaded from http://www.scottreed.info/. The images are rescaled to 64x64.
The ground-truth factors of variation are:
0 - elevation (4 different values) [0,3]
1 - azimuth (24 different values) [0,23]
2 - object type (183 different values) [0,182]
Reference: Code adapted from
https://github.com/google-research/disentanglement_lib/blob/master/disentanglement_lib/data/ground_truth/cars3d.py
"""
lat_names = ('elevation', 'azimuth', 'object_type')
lat_sizes = np.array([4, 24, 183])
def __init__(self, path_to_data, subsample=1, transform=None):
"""
Parameters
----------
subsample : int
Only load every |subsample| number of images.
"""
from sklearn.utils.extmath import cartesian
self.imgs = self._load_data()[::subsample]
self.lv = cartesian([np.array(list(range(i))) for i in self.lat_sizes])[::subsample]
self.transform = transform
def __len__(self):
return len(self.imgs)
def __getitem__(self, idx):
if self.transform:
sample = self.transform(self.imgs[idx])
return sample.float(), self.lv[idx]
def _load_data(self):
dataset = np.zeros((24 * 4 * 183, 64, 64, 3))
for i, filename in enumerate(path_to_data.joinpath("data/cars").glob("*.mat")):
data_mesh = self._load_mesh(filename)
factor1 = np.array(list(range(4)))
factor2 = np.array(list(range(24)))
all_factors = np.transpose([
np.tile(factor1, len(factor2)),
np.repeat(factor2, len(factor1)),
np.tile(i,
len(factor1) * len(factor2))
])
dataset[np.arange(i, 24 * 4 * 183, 183)] = data_mesh
return dataset
def _load_mesh(self, filename):
"""Parses a single source file and rescales contained images."""
import scipy.io as sio
import PIL
mesh = np.einsum("abcde->deabc", sio.loadmat(filename)["im"])
flattened_mesh = mesh.reshape((-1,) + mesh.shape[2:])
rescaled_mesh = np.zeros((flattened_mesh.shape[0], 64, 64, 3))
for i in range(flattened_mesh.shape[0]):
pic = PIL.Image.fromarray(flattened_mesh[i, :, :, :])
pic.thumbnail((64, 64), PIL.Image.ANTIALIAS)
rescaled_mesh[i, :, :, :] = np.array(pic)
return rescaled_mesh * 1. / 255
all_transforms = transforms.Compose([transforms.ToTensor()])
train_data = cars3dDataset(path_to_data, transform=all_transforms)
if args.classes != -1:
assert len(args.classes) == 3
idx = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.lv[:,i], label) for label in classs]) for i, classs in enumerate(args.classes) if classs != -1]
idx2 = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.lv[:,i], label) for label in np.unique(train_data.lv[:,i])]) for i, classs in enumerate(args.classes) if classs == -1]
idx4 = functools.reduce(lambda x,y: x & y, idx+idx2)
train_data.lv = train_data.lv[idx4]
train_data.imgs = train_data.imgs[idx4]
cars3d_loader = DataLoader(train_data, batch_size=args.mb_size,
shuffle=args.shuffle, pin_memory=True, num_workers=args.workers)
_, c, x, y = next(iter(cars3d_loader))[0].size()
return cars3d_loader#, c*x*y, c
def get_3dshapes_dataloader(args, path_to_data=DATA_DIR.joinpath('3dshapes')):
"""3dshapes dataloader with images rescaled to (28,28,3)"""
name = '{}/3dshapes.h5'.format(path_to_data)
if not os.path.exists(name):
print('Data at the given path doesn\'t exist. ')
os.system(" mkdir ~/data/3dshapes;"
" wget -O ~/data/3dshapes/3dshapes.h5 https://storage.googleapis.com/3d-shapes/3dshapes.h5")
from utils import Resize
import h5py
class d3shapesDataset(Dataset):
"""3dshapes dataloader class adapted from disentanglement_lib"""
lat_names = ('floor_hue', 'wall_hue', 'object_hue', 'scale', 'shape', 'orientation')
lat_sizes = np.array([10, 10, 10, 8, 4, 15])
def __init__(self, path_to_data, subsample=1, transform=None):
"""
Parameters
----------
subsample : int
Only load every |subsample| number of images.
"""
dataset = h5py.File(path_to_data, 'r')
self.imgs = dataset['images'][::subsample]
self.lv = dataset['labels'][::subsample]
import inspect
if "irs" in ''.join([str(f.filename) for f in inspect.stack()]):
# The following three lines are to be used only for disentanglement evaluation
# because the disent library uses different identifiers for the same generative factors
for dim in range(self.lv.shape[1]):
u = list(np.unique(self.lv[:,dim]))
self.lv[:,dim] = np.array([u.index(self.lv[i, dim]) for i in range(self.lv.shape[0])])
self.transform = transform
def __len__(self):
return len(self.imgs)
def __getitem__(self, idx):
sample = self.imgs[idx] / 255
if self.transform:
sample = self.transform(sample)
return sample, self.lv[idx]
transform = transforms.Compose([Resize(28), transforms.ToTensor()])
train_data = d3shapesDataset(name, transform=transform)
if args.classes != -1:
assert len(args.classes) == 6
idx = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.lv[:,i], label) for label in classs]) for i, classs in enumerate(args.classes) if classs != -1]
idx2 = [functools.reduce(lambda x,y:x|y, [np.isclose(train_data.lv[:,i], label) for label in np.unique(train_data.lv[:,i])]) for i, classs in enumerate(args.classes) if classs == -1]
idx4 = functools.reduce(lambda x,y: x & y, idx+idx2)
train_data.lv = train_data.lv[idx4]
train_data.imgs = train_data.imgs[idx4]
d3shapes_loader = DataLoader(train_data, batch_size=args.mb_size,
shuffle=args.shuffle, pin_memory=True, num_workers=args.workers)
_, c, x, y = next(iter(d3shapes_loader))[0].size()
return d3shapes_loader#, c*x*y, c
def spiral(N: int, rand_state: np.random.RandomState, std, center=(0,0), b=1.0):
"""
Returns N 2d points drawing an Archimedean spiral of center and b specified from 0 to 8pi.
:param N: an even number of points
:param state: random seed
:param std: standard deviation of noise
:return: a pair of (N,2) matrices, the true dataset and the noisy one
"""
#assert N % 2 == 0
theta = np.linspace(0, 8*np.pi, N)
x = b * theta * np.cos(theta) + center[0]
y = b * theta * np.sin(theta) + center[1]
noise = rand_state.normal(0, std, 2*N)
x_n = x + noise[:N]
y_n = y + noise[N:]
return (np.vstack([x,y]).T, np.vstack([x_n,y_n]).T)
class Spiral(Dataset):
"""
Pytorch dataset for a spiral. Returns a pair of points.
"""
def __init__(self, N:int, rand_state: np.random.RandomState, std: float):
self.x, self.x_n = spiral(N, rand_state, std, b=0.2)
self.x = torch.from_numpy(self.x)
self.x_n = torch.from_numpy(self.x_n)
def __len__(self):
return self.x.shape[0]
def __getitem__(self, i):
return self.x_n[i], 1
class MultivariateGaussian(Dataset):
"""
Pytorch dataset for a spiral. Returns a pair of points.
"""
def __init__(self, N:int, rand_state: np.random.RandomState, std: float):
cov = rand_state.normal(scale=std, size=(140,140))
cov = cov @ cov.T
self.x = rand_state.multivariate_normal([0.0 for _ in range(140)], cov, size=(N,))
self.x = torch.from_numpy(self.x)
def __len__(self):
return self.x.shape[0]
def __getitem__(self, i):
return self.x[i], 1
def square(N: int, rand_state: np.random.RandomState, std, bottom_left=(-1.0,-1.0), side=2.0):
"""
Returns N 2d points drawing a square of bottom left vertex and side specified.
:param N: an even number of points
:param state: random seed
:param std: standard deviation of noise
:param bottom_left: coordinates of the bottom left vertex
:param side: length of side
:return: a pair of (N,2) matrices, the true dataset and the noisy one
"""
assert N % 2 == 0
points_x = np.linspace(bottom_left[0], bottom_left[0] + side, N//2)
points_y = points_x - bottom_left[0] + bottom_left[1]
a_x = np.empty((N//2,))
a_x[::2] = bottom_left[0] + side #right
a_x[1::2] = bottom_left[0] #left
a_y = np.empty((N//2,))
a_y[::2] = bottom_left[1] #bottom
a_y[1::2] = bottom_left[1] + side #top
x = np.concatenate([points_x, a_x])
y = np.concatenate([a_y, points_y])
noise = rand_state.normal(0, std, 2*N)
x_n = x + noise[:N]
y_n = y + noise[N:]
return (np.vstack([x,y]).T, np.vstack([x_n,y_n]).T)
class SmallNORB(data.Dataset):
"""`SmallNORB <https://cs.nyu.edu/~ylclab/data/norb-v1.0-small//>`_ Dataset.
Args:
root (string): Root directory of dataset where processed folder and
and raw folder exist.
train (bool, optional): If True, creates dataset from the training files,
otherwise from the test files.
download (bool, optional): If true, downloads the dataset from the internet and
puts it in root directory. If the dataset is already processed, it is not processed
and downloaded again. If dataset is only already downloaded, it is not
downloaded again.
transform (callable, optional): A function/transform that takes in an PIL image
and returns a transformed version. E.g, ``transforms.RandomCrop``
target_transform (callable, optional): A function/transform that takes in the
target and transforms it.
info_transform (callable, optional): A function/transform that takes in the
info and transforms it.
mode (string, optional): Denotes how the images in the data files are returned. Possible values:
- all (default): both left and right are included separately.
- stereo: left and right images are included as corresponding pairs.
- left: only the left images are included.
- right: only the right images are included.
Code adapted from disentanglement_lib.
"""
dataset_root = "https://cs.nyu.edu/~ylclab/data/norb-v1.0-small/"
data_files = {
'train': {
'dat': {
"name": 'smallnorb-5x46789x9x18x6x2x96x96-training-dat.mat',
"md5_gz": "66054832f9accfe74a0f4c36a75bc0a2",
"md5": "8138a0902307b32dfa0025a36dfa45ec"
},
'info': {
"name": 'smallnorb-5x46789x9x18x6x2x96x96-training-info.mat',
"md5_gz": "51dee1210a742582ff607dfd94e332e3",
"md5": "19faee774120001fc7e17980d6960451"
},
'cat': {
"name": 'smallnorb-5x46789x9x18x6x2x96x96-training-cat.mat',
"md5_gz": "23c8b86101fbf0904a000b43d3ed2fd9",
"md5": "fd5120d3f770ad57ebe620eb61a0b633"
},
},
'test': {
'dat': {
"name": 'smallnorb-5x01235x9x18x6x2x96x96-testing-dat.mat',
"md5_gz": "e4ad715691ed5a3a5f138751a4ceb071",
"md5": "e9920b7f7b2869a8f1a12e945b2c166c"
},
'info': {
"name": 'smallnorb-5x01235x9x18x6x2x96x96-testing-info.mat',
"md5_gz": "a9454f3864d7fd4bb3ea7fc3eb84924e",
"md5": "7c5b871cc69dcadec1bf6a18141f5edc"
},
'cat': {
"name": 'smallnorb-5x01235x9x18x6x2x96x96-testing-cat.mat',
"md5_gz": "5aa791cd7e6016cf957ce9bdb93b8603",
"md5": "fd5120d3f770ad57ebe620eb61a0b633"
},
},
}
raw_folder = 'raw'
processed_folder = 'processed'
train_image_file = 'train_img'
train_label_file = 'train_label'
train_info_file = 'train_info'
test_image_file = 'test_img'
test_label_file = 'test_label'
test_info_file = 'test_info'
extension = '.pt'
def __init__(self, root, train=True, transform=None, target_transform=None, info_transform=None, download=False,
mode="left"):
self.root = os.path.expanduser(root)
self.transform = transform
self.target_transform = target_transform
self.info_transform = info_transform
self.train = train # training set or test set
self.mode = mode
if download:
self.download()
if not self._check_exists():
raise RuntimeError('Dataset not found or corrupted.' +
' You can use download=True to download it')
# load test or train set
image_file = self.train_image_file if self.train else self.test_image_file
label_file = self.train_label_file if self.train else self.test_label_file
info_file = self.train_info_file if self.train else self.test_info_file
# load labels
self.labels = self._load(label_file)
# load info files
self.infos = self._load(info_file)
self.infos[:,2] = torch.LongTensor([int(x/2) for x in self.infos[:,2]])
self.infos[:,0] = torch.LongTensor([int(x/2) for x in self.infos[:,0]])
self.infos = torch.cat([self.labels.view(-1,1), self.infos], dim=1)
# load right set
if self.mode == "left":
self.data = self._load("{}_left".format(image_file))
# load left set
elif self.mode == "right":
self.data = self._load("{}_right".format(image_file))
elif self.mode == "all" or self.mode == "stereo":
left_data = self._load("{}_left".format(image_file))
right_data = self._load("{}_right".format(image_file))
# load stereo
if self.mode == "stereo":
self.data = torch.stack((left_data, right_data), dim=1)
# load all
else:
self.data = torch.cat((left_data, right_data), dim=0)
def __getitem__(self, index):
"""
Args:
index (int): Index
Returns:
mode ``all'', ``left'', ``right'':
tuple: (image, target, info)
mode ``stereo'':
tuple: (image left, image right, target, info)
"""
target = self.labels[index % 24300] if self.mode == "all" else self.labels[index]
if self.target_transform is not None:
target = self.target_transform(target)
info = self.infos[index % 24300] if self.mode == "all" else self.infos[index]
if self.info_transform is not None:
info = self.info_transform(info)
if self.mode == "stereo":
img_left = self._transform(self.data[index, 0])
img_right = self._transform(self.data[index, 1])
return img_left, img_right, target, info
img = self._transform(self.data[index])
return img, info
def __len__(self):
return len(self.data)
def _transform(self, img):
# doing this so that it is consistent with all other data sets
# to return a PIL Image
from PIL import Image
img = Image.fromarray(img.numpy(), mode='L')
if self.transform is not None:
img = self.transform(img)
return img
def _load(self, file_name):
return torch.load(os.path.join(self.root, self.processed_folder, file_name + self.extension))
def _save(self, file, file_name):
with open(os.path.join(self.root, self.processed_folder, file_name + self.extension), 'wb') as f:
torch.save(file, f)
def _check_exists(self):
""" Check if processed files exists."""
files = (
"{}_left".format(self.train_image_file),
"{}_right".format(self.train_image_file),
"{}_left".format(self.test_image_file),
"{}_right".format(self.test_image_file),
self.test_label_file,
self.train_label_file
)
fpaths = [os.path.exists(os.path.join(self.root, self.processed_folder, f + self.extension)) for f in files]
return False not in fpaths
def _flat_data_files(self):
return [j for i in self.data_files.values() for j in list(i.values())]
def _check_integrity(self):
"""Check if unpacked files have correct md5 sum."""
from torchvision.datasets.utils import download_url, check_integrity
root = self.root
for file_dict in self._flat_data_files():
filename = file_dict["name"]
md5 = file_dict["md5"]
fpath = os.path.join(root, self.raw_folder, filename)
if not check_integrity(fpath, md5):
return False
return True
def download(self):
"""Download the SmallNORB data if it doesn't exist in processed_folder already."""
import gzip
import errno
from torchvision.datasets.utils import download_url, check_integrity
if self._check_exists():
return
# check if already extracted and verified
if self._check_integrity():
print('Files already downloaded and verified')
else:
# download and extract
for file_dict in self._flat_data_files():
url = self.dataset_root + file_dict["name"] + '.gz'
filename = file_dict["name"]
gz_filename = filename + '.gz'
md5 = file_dict["md5_gz"]
fpath = os.path.join(self.root, self.raw_folder, filename)
gz_fpath = fpath + '.gz'
# download if compressed file not exists and verified
download_url(url, os.path.join(self.root, self.raw_folder), gz_filename, md5)
print('# Extracting data {}\n'.format(filename))
with open(fpath, 'wb') as out_f, \
gzip.GzipFile(gz_fpath) as zip_f:
out_f.write(zip_f.read())
os.unlink(gz_fpath)
# process and save as torch files
print('Processing...')
# create processed folder
try:
os.makedirs(os.path.join(self.root, self.processed_folder))
except OSError as e:
if e.errno == errno.EEXIST:
pass
else:
raise
# read train files
left_train_img, right_train_img = self._read_image_file(self.data_files["train"]["dat"]["name"])
train_info = self._read_info_file(self.data_files["train"]["info"]["name"])
train_label = self._read_label_file(self.data_files["train"]["cat"]["name"])
# read test files
left_test_img, right_test_img = self._read_image_file(self.data_files["test"]["dat"]["name"])
test_info = self._read_info_file(self.data_files["test"]["info"]["name"])
test_label = self._read_label_file(self.data_files["test"]["cat"]["name"])
# save training files
self._save(left_train_img, "{}_left".format(self.train_image_file))
self._save(right_train_img, "{}_right".format(self.train_image_file))
self._save(train_label, self.train_label_file)
self._save(train_info, self.train_info_file)
# save test files
self._save(left_test_img, "{}_left".format(self.test_image_file))
self._save(right_test_img, "{}_right".format(self.test_image_file))
self._save(test_label, self.test_label_file)
self._save(test_info, self.test_info_file)
print('Done!')
@staticmethod
def _parse_header(file_pointer):
# Read magic number and ignore
struct.unpack('<BBBB', file_pointer.read(4)) # '<' is little endian)
# Read dimensions
dimensions = []
num_dims, = struct.unpack('<i', file_pointer.read(4)) # '<' is little endian)
for _ in range(num_dims):
dimensions.extend(struct.unpack('<i', file_pointer.read(4)))
return dimensions
def _read_image_file(self, file_name):
fpath = os.path.join(self.root, self.raw_folder, file_name)
with open(fpath, mode='rb') as f:
dimensions = self._parse_header(f)
assert dimensions == [24300, 2, 96, 96]
num_samples, _, height, width = dimensions
left_samples = np.zeros(shape=(num_samples, height, width), dtype=np.uint8)
right_samples = np.zeros(shape=(num_samples, height, width), dtype=np.uint8)
for i in range(num_samples):
# left and right images stored in pairs, left first
left_samples[i, :, :] = self._read_image(f, height, width)
right_samples[i, :, :] = self._read_image(f, height, width)
return torch.ByteTensor(left_samples), torch.ByteTensor(right_samples)
@staticmethod
def _read_image(file_pointer, height, width):
"""Read raw image data and restore shape as appropriate. """
image = struct.unpack('<' + height * width * 'B', file_pointer.read(height * width))
image = np.uint8(np.reshape(image, newshape=(height, width)))
return image
def _read_label_file(self, file_name):
fpath = os.path.join(self.root, self.raw_folder, file_name)
with open(fpath, mode='rb') as f:
dimensions = self._parse_header(f)
assert dimensions == [24300]
num_samples = dimensions[0]
struct.unpack('<BBBB', f.read(4)) # ignore this integer
struct.unpack('<BBBB', f.read(4)) # ignore this integer
labels = np.zeros(shape=num_samples, dtype=np.int32)
for i in range(num_samples):
category, = struct.unpack('<i', f.read(4))
labels[i] = category
return torch.LongTensor(labels)
def _read_info_file(self, file_name):
fpath = os.path.join(self.root, self.raw_folder, file_name)
with open(fpath, mode='rb') as f:
dimensions = self._parse_header(f)
assert dimensions == [24300, 4]
num_samples, num_info = dimensions
struct.unpack('<BBBB', f.read(4)) # ignore this integer
infos = np.zeros(shape=(num_samples, num_info), dtype=np.int32)
for r in range(num_samples):
for c in range(num_info):
info, = struct.unpack('<i', f.read(4))
infos[r, c] = info
return torch.LongTensor(infos)
# From https://stackoverflow.com/a/55593757/3830367
class CustomTensorDataset(Dataset):
"""TensorDataset with support of transforms.
"""
def __init__(self, tensors, transforms=None):
assert all(tensors[0].shape[0] == tensor.shape[0] for tensor in tensors)
self.tensors = tensors
self.transforms = transforms
def __getitem__(self, index):
x = self.tensors[0][index]
if self.transforms is not None:
x = self.transforms(x)
y = self.tensors[1][index]
return x, y
def __len__(self):
return self.tensors[0].shape[0]
def get_diabetes_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
import openml
"""Diabetes dataloader."""
print("Loading Pima Indians Diabetes Database.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = openml.datasets.get_dataset(37)
x, _, _, _ = dataset.get_data(dataset_format="array")
y = torch.from_numpy(x[:,-1])
x = torch.from_numpy(x[:,:-1])
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(x, y, test_size=0.33, random_state=42)
dataset = CustomTensorDataset([X_train, y_train] if args.train else [X_test, y_test])
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_ionosphere_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
import openml
"""Ionosphere dataloader."""
print("Loading Ionosphere.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = openml.datasets.get_dataset(59)
x, _, _, _ = dataset.get_data(dataset_format="array")
y = torch.from_numpy(x[:,-1])
x = torch.from_numpy(x[:,:-1])
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(x, y, test_size=0.2, random_state=42)
X_train, X_val, y_train, y_val = train_test_split(X_train, y_train, test_size=0.3, random_state=42)
if args.train and args.val:
data = [X_val, y_val]
elif args.test:
data = [X_test, y_test]
else:
data = [X_train, y_train]
dataset = CustomTensorDataset(data)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_cholesterol_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
import openml
"""Cholesterol dataloader."""
print("Loading Cholesterol.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = openml.datasets.get_dataset(204)
x, _, _, _ = dataset.get_data(dataset_format="array")
y = torch.from_numpy(x[:,-1])
x = torch.nan_to_num(torch.from_numpy(x[:,:-1]))
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(x, y, test_size=0.2, random_state=42)
X_train, X_val, y_train, y_val = train_test_split(X_train, y_train, test_size=0.3, random_state=42)
if args.train and args.val:
data = [X_val, y_val]
elif args.test:
data = [X_test, y_test]
else:
data = [X_train, y_train]
dataset = CustomTensorDataset(data)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_yacht_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
import openml
"""Yacht dataloader."""
print("Loading Yacht.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = openml.datasets.get_dataset(42370)
x, _, _, _ = dataset.get_data(dataset_format="array")
y = torch.from_numpy(x[:,-1])
x = torch.nan_to_num(torch.from_numpy(x[:,:-1]))
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(x, y, test_size=0.2, random_state=42)
X_train, X_val, y_train, y_val = train_test_split(X_train, y_train, test_size=0.3, random_state=42)
if args.train and args.val:
data = [X_val, y_val]
elif args.test:
data = [X_test, y_test]
else:
data = [X_train, y_train]
dataset = CustomTensorDataset(data)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader
def get_liver_dataloader(args, path_to_data=DATA_DIR.joinpath("mnist")):
import openml
"""Liver dataloader."""
print("Loading Liver.")
all_transforms = transforms.Compose(args.pre_transformations + [
transforms.ToTensor()] + args.post_transformations)
dataset = openml.datasets.get_dataset(1480)
x, _, _, _ = dataset.get_data(dataset_format="array")
y = torch.from_numpy(x[:,-1])
x = torch.from_numpy(x[:,:-1])
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(x, y, test_size=0.2, random_state=42)
X_train, X_val, y_train, y_val = train_test_split(X_train, y_train, test_size=0.3, random_state=42)
if args.train and args.val:
data = [X_val, y_val]
elif args.test:
data = [X_test, y_test]
else:
data = [X_train, y_train]
dataset = CustomTensorDataset(data)
train_loader = DataLoader(dataset, batch_size=args.mb_size, shuffle=args.shuffle,
pin_memory=True, num_workers=args.workers, worker_init_fn=seed_worker)
return train_loader