Hello,
After running selscan norm --xpehh --files chr1.xpehh.out --bp-win --winsize 100000, I obtained the file xpehh.out.norm.100kb.windows with the following format:
chr start end n_snps frac_top frac_bottom perc_top perc_bottom top_score bottom_score
13 18600001 18700000 25 0 0 100 1 -1.50283 -1.64363
13 18800001 18900000 26 0 0 100 1 0.548455 -1.20712
13 18900001 19000000 86 0 0 100 100 1.67984 -1.28022
13 19000001 19100000 11 0 0 1 1 -1.38988 -1.63457
However, I am confused about the meaning of column 7 (perc_top) and column 8 (perc_bottom).Why do both columns sometimes show 1 or 100 at the same time?Does the value 1 mean the top 1%? And what does 100 represent?
I would really appreciate your clarification. Thank you very much!
Hello,
After running selscan norm --xpehh --files chr1.xpehh.out --bp-win --winsize 100000, I obtained the file xpehh.out.norm.100kb.windows with the following format:
chr start end n_snps frac_top frac_bottom perc_top perc_bottom top_score bottom_score
13 18600001 18700000 25 0 0 100 1 -1.50283 -1.64363
13 18800001 18900000 26 0 0 100 1 0.548455 -1.20712
13 18900001 19000000 86 0 0 100 100 1.67984 -1.28022
13 19000001 19100000 11 0 0 1 1 -1.38988 -1.63457
However, I am confused about the meaning of column 7 (perc_top) and column 8 (perc_bottom).Why do both columns sometimes show 1 or 100 at the same time?Does the value 1 mean the top 1%? And what does 100 represent?
I would really appreciate your clarification. Thank you very much!