Manhattan-plot: MIAMI plotting, aka stratified plotting.

[swvanderlaan]

Add in option to choose for a stratified Manhattan (bottom vs. upper for instance male vs. female), i.e. a MIAMI-plot. There is a specific package that has this function --> borrow it from there... 🔶

[xEmz]

#load required package
library(hudson)

#input
two files with 4 columns : SNP, CHR, POS, pvalue

#create miami plot
gmirror(top=female_hudson, bottom=male_hudson, tline=0.05/nrow(female_hudson), bline=0.05/nrow(male_hudson),
toptitle = "GWAS Comparison: Female samples", bottomtitle = "GWAS Comparison: Male samples",
highlight_p = c(0.05/nrow(female_hudson),0.05/nrow(male_hudson)), highlighter="dodgerblue")