diff --git a/posterior_database/posteriors/dogs-dogs.json b/posterior_database/posteriors/dogs-dogs.json index 5bdacbe9..6e8b7306 100644 --- a/posterior_database/posteriors/dogs-dogs.json +++ b/posterior_database/posteriors/dogs-dogs.json @@ -1,10 +1,14 @@ { "name": "dogs-dogs", - "keywords": ["arm book", "stan examples", "pathfinder paper"], + "keywords": [ + "arm book", + "stan examples", + "pathfinder paper" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.24", "model_name": "dogs", "data_name": "dogs", - "reference_posterior_name": null, + "reference_posterior_name": "dogs-dogs", "references": "gelman2006data", "dimensions": { "beta": 3 diff --git a/posterior_database/posteriors/nes_logit_data-nes_logit_model.json b/posterior_database/posteriors/nes_logit_data-nes_logit_model.json index eee7a94f..0c122911 100644 --- a/posterior_database/posteriors/nes_logit_data-nes_logit_model.json +++ b/posterior_database/posteriors/nes_logit_data-nes_logit_model.json @@ -1,12 +1,14 @@ { - "keywords": ["arm book"], + "keywords": [ + "arm book" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.5", "references": "gelman2006data", "dimensions": { "alpha": 1, "beta": 1 }, - "reference_posterior_name": null, + "reference_posterior_name": "nes_logit_data-nes_logit_model", "added_date": "2021-07-01", "added_by": "Kane Lindsay", "name": "nes_logit_data-nes_logit_model", diff --git a/posterior_database/posteriors/wells_data-wells_dist.json b/posterior_database/posteriors/wells_data-wells_dist.json index ec690396..47ba00ad 100644 --- a/posterior_database/posteriors/wells_data-wells_dist.json +++ b/posterior_database/posteriors/wells_data-wells_dist.json @@ -1,11 +1,14 @@ { - "keywords": ["arm book", "logistic regression"], + "keywords": [ + "arm book", + "logistic regression" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.5", "references": "gelman2006data", "dimensions": { "beta": 2 }, - "reference_posterior_name": null, + "reference_posterior_name": "wells_data-wells_dist", "added_date": "2020-10-02", "added_by": "Phil Clemson", "name": "wells_data-wells_dist", diff --git a/posterior_database/posteriors/wells_data-wells_dist100_model.json b/posterior_database/posteriors/wells_data-wells_dist100_model.json index 0db0bf00..32976b0e 100644 --- a/posterior_database/posteriors/wells_data-wells_dist100_model.json +++ b/posterior_database/posteriors/wells_data-wells_dist100_model.json @@ -1,12 +1,15 @@ { - "keywords": ["arm book", "logistic regression"], + "keywords": [ + "arm book", + "logistic regression" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.5", "references": "gelman2006data", "dimensions": { "alpha": 1, "beta": 1 }, - "reference_posterior_name": null, + "reference_posterior_name": "wells_data-wells_dist100_model", "added_date": "2021-07-07", "added_by": "Kane Lindsay", "name": "wells_data-wells_dist100_model", diff --git a/posterior_database/reference_posteriors/draws/draws/dogs-dogs.json.zip b/posterior_database/reference_posteriors/draws/draws/dogs-dogs.json.zip new file mode 100644 index 00000000..b86b004e Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/dogs-dogs.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/draws/nes_logit_data-nes_logit_model.json.zip b/posterior_database/reference_posteriors/draws/draws/nes_logit_data-nes_logit_model.json.zip new file mode 100644 index 00000000..32b18c9a Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/nes_logit_data-nes_logit_model.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist.json.zip b/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist.json.zip new file mode 100644 index 00000000..ad030042 Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist100_model.json.zip b/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist100_model.json.zip new file mode 100644 index 00000000..50d69808 Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/wells_data-wells_dist100_model.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/info/dogs-dogs.info.json b/posterior_database/reference_posteriors/draws/info/dogs-dogs.info.json new file mode 100644 index 00000000..3030bf8c --- /dev/null +++ b/posterior_database/reference_posteriors/draws/info/dogs-dogs.info.json @@ -0,0 +1,45 @@ +{ + "name": "dogs-dogs", + "inference": { + "method": "stan_sampling", + "method_arguments": { + "chains": 4, + "iter": 20000, + "warmup": 10000, + "thin": 10, + "seed": 2544, + "control": { + "adapt_delta": 0.8 + } + } + 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a/posterior_database/reference_posteriors/draws/info/nes_logit_data-nes_logit_model.info.json b/posterior_database/reference_posteriors/draws/info/nes_logit_data-nes_logit_model.info.json new file mode 100644 index 00000000..3fd38d2d --- /dev/null +++ b/posterior_database/reference_posteriors/draws/info/nes_logit_data-nes_logit_model.info.json @@ -0,0 +1,45 @@ +{ + "name": "nes_logit_data-nes_logit_model", + "inference": { + "method": "stan_sampling", + "method_arguments": { + "chains": 4, + "iter": 20000, + "warmup": 10000, + "thin": 10, + "seed": 2544, + "control": { + "adapt_delta": 0.8 + } + } + }, + "diagnostics": { + "diagnostics_information": { + "names": ["alpha", "beta"] + }, + "ndraws": 10000, + "nchains": 4, + "effective_sample_size_bulk": 9877.7772705412244, + "effective_sample_size_tail": 9146.2529121912303, + "r_hat": 1.00046545172971, + "divergent_transitions": [0, 0, 0, 0], + "expected_fraction_of_missing_information": [1.99157745817818, 1.95553477491594, 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xfun_0.52 fs_1.6.5 pkgconfig_2.0.3 " + } +} diff --git a/posterior_database/reference_posteriors/draws/info/wells_data-wells_dist100_model.info.json b/posterior_database/reference_posteriors/draws/info/wells_data-wells_dist100_model.info.json new file mode 100644 index 00000000..a8b5b78a --- /dev/null +++ b/posterior_database/reference_posteriors/draws/info/wells_data-wells_dist100_model.info.json @@ -0,0 +1,45 @@ +{ + "name": "wells_data-wells_dist100_model", + "inference": { + "method": "stan_sampling", + "method_arguments": { + "chains": 4, + "iter": 20000, + "warmup": 10000, + "thin": 10, + "seed": 2544, + "control": { + "adapt_delta": 0.8 + } + } + }, + "diagnostics": { + "diagnostics_information": { + "names": ["alpha", "beta"] + }, + "ndraws": 10000, + "nchains": 4, + "effective_sample_size_bulk": 9730.9171651038341, + "effective_sample_size_tail": 9549.2506288668374, + "r_hat": 0.999861383393492, + "divergent_transitions": [0, 0, 0, 0], + 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pkgload_1.4.0 abind_1.4-8 miniUI_0.1.1.1 withr_3.0.2 desc_1.4.3 grid_4.4.3 \n[29] urlchecker_1.0.1 git2r_0.36.2 profvis_0.4.0 xtable_1.8-4 colorspace_2.1-1 scales_1.3.0 cli_3.6.5 \n[36] rmarkdown_2.29 crayon_1.5.3 generics_0.1.3 remotes_2.5.0 rstudioapi_0.17.1 tzdb_0.5.0 sessioninfo_1.2.3 \n[43] cachem_1.1.0 parallel_4.4.3 matrixStats_1.5.0 vctrs_0.6.5 hms_1.1.3 bit64_4.6.0-1 jquerylib_0.1.4 \n[50] glue_1.8.0 ps_1.9.0 distributional_0.5.0 stringi_1.8.7 gtable_0.3.6 later_1.4.2 munsell_0.5.1 \n[57] pillar_1.10.2 htmltools_0.5.8.1 brio_1.1.5 R6_2.6.1 rprojroot_2.0.4 vroom_1.6.5 evaluate_1.0.3 \n[64] shiny_1.10.0 backports_1.5.0 memoise_2.0.1 httpuv_1.6.15 bslib_0.9.0 Rcpp_1.0.14 checkmate_2.3.2 \n[71] xfun_0.52 fs_1.6.5 pkgconfig_2.0.3 ", + "r_summary_statistic": "posterior R package, version 1.6.1" + } +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/dogs-dogs.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/dogs-dogs.json new file mode 100644 index 00000000..b7720347 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/dogs-dogs.json @@ -0,0 +1,4 @@ +{ + "names": "beta", + "mcse_mean": [0.0023897919745767735, 0.00040853624717604881, 0.00044065656139442378] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/nes_logit_data-nes_logit_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/nes_logit_data-nes_logit_model.json new file mode 100644 index 00000000..5a7c2082 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/nes_logit_data-nes_logit_model.json @@ -0,0 +1,4 @@ +{ + "names": ["alpha", "beta"], + "mcse_mean": [0.0019072133226699687, 0.00057577234552292039] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist.json new file mode 100644 index 00000000..fc70dce9 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist.json @@ -0,0 +1,4 @@ +{ + "names": "beta", + "mcse_mean": [0.00061402044311107166, 9.9994145825834533e-06] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist100_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist100_model.json new file mode 100644 index 00000000..60a12e51 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist100_model.json @@ -0,0 +1,4 @@ +{ + "names": ["alpha", "beta"], + "mcse_mean": [0.00061385661680455966, 0.00097838462935483615] +}