mkdocs.yml

# Setup of all the options available in the documentation
site_name: MMASeq Documentation
site_url: https://ssiutility.dk
theme:
  name: readthedocs #material 
  font:
    text: Merriweather Sans
    code: Red Hat Mono
  logo: assets/MMASeq_logo.png
  #favicon: assets/ssi_eu.svg
  features:
    - content.code.select
    - content.code.annotate
    - content.code.copy
    - navigation.sections
    - navigation.footer
    - toc.integrate 
  annotation: material/information
  palette:
    # Dark Mode
    - scheme: slate
      toggle:
        icon: material/weather-sunny
        name: Dark mode
      primary: green
      accent: deep purple
plugins:
  - search

# Order of the pages
nav:
  - Home: index.md
  - Description: description.md
  - Installation: installation.md
  - Supported Analysis: supported_analysis.md
  - Tools and Databases: tools_databases.md
  - Tutorials: tutorials.md
  - References: references.md

# Markdown Extension for our each page in the documentation 
markdown_extensions: 
  - def_list
  - attr_list
  - pymdownx.emoji:
      emoji_index: !!python/name:material.extensions.emoji.twemoji
      emoji_generator: !!python/name:material.extensions.emoji.to_svg
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences:
      custom_fences:
        - name: mermaid
          class: mermaid
          format: !!python/name:pymdownx.superfences.fence_code_format
  - pymdownx.tabbed:
      alternate_style: true
  - admonition
  - pymdownx.details

extra:
  social:
    - icon: simple/github
      link: https://github.com/ssi-dk/ssi_analysis_utility


copyright: The MIT License (MIT)  Copyright © 2023 Statens Serum Institut