MMASeq/.github/workflows/VALIDATION.yml at dev · ssi-dk/MMASeq · GitHub

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name: Pull Request Label Validation

on:
  pull_request:
    types: [opened, synchronize, reopened, edited]

jobs:
  check-label:
    runs-on: ubuntu-latest

    steps:
      - name: Wait if no or multiple labels exists
        uses: actions/github-script@v7
        with:
          script: |
            const pr = await github.rest.pulls.get({
              owner: context.repo.owner,
              repo: context.repo.repo,
              pull_number: context.issue.number
            });

            const labels = pr.data.labels
              .map(l => l.name)
              .filter(l => ["feature", "patch", "build"].includes(l));

            if (labels.length !== 1) {
              console.log("No or multiple labels exists! Waiting");
              return "wait";
            }

            return "continue";


      - name: Delayed execution
        if: steps.check.outputs.result == 'wait'
        run: sleep 30

      - name: Check labels
        uses: actions/github-script@v7
        with:
          script: |
            const run = await github.rest.actions.getWorkflowRun({
              owner: context.repo.owner,
              repo: context.repo.repo,
              run_id: context.runId
            });

            // Get PR number from workflow run
            const pr_number = run.data.pull_requests[0]?.number;

            if (!pr_number) {
              core.setFailed('Could not find associated pull request');
              return;
            }

            const pr = await github.rest.pulls.get({
              owner: context.repo.owner,
              repo: context.repo.repo,
              pull_number: pr_number
            });

            const labels = pr.data.labels
              .map(l => l.name)
              .filter(l =>
                ["feature","patch","build","major"].includes(l)
              );

            if (labels.length === 0) {
              core.setFailed(
                `PR does not contain any version labels, it must contain exactly one of the following labels - major, feature, patch, build`
              );
            } else if (labels.length > 1) {
              core.setFailed(
                `PR contains multiple version labels, it must contain exactly one of the following labels - major, feature, patch, build. Found: ${labels.join(", ")}`
              );
            }

  build:
    needs: check-label
    strategy:
      matrix:

        os:
          - ubuntu-latest
          - ubuntu-22.04
          - macos-latest

    runs-on: ${{ matrix.os }}

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v2
        with:
          environment-name: test-env
          init-shell: bash

      - name: Test conda installation
        shell: bash -l {0}
        run: |
          micromamba install conda --yes
          conda config --set channel_priority strict

          # install package from repo
          pip install .

      - name: Verify package imports
        shell: bash -l {0}
        run: |
          mmaseq --version

      - name: Test pipeline
        shell: bash -l {0}
        run: |
          mmadeploy --deploy_dir ~/test --threads 3 --test --verbosity 2