diff --git a/.debugging/test-migrate-verify.sh b/.debugging/test-migrate-verify.sh
old mode 100644
new mode 100755
diff --git a/src/commands/migrate/helpers/handle-migrate-action.js b/src/commands/migrate/helpers/handle-migrate-action.js
index 6f5504e6..131ef45d 100644
--- a/src/commands/migrate/helpers/handle-migrate-action.js
+++ b/src/commands/migrate/helpers/handle-migrate-action.js
@@ -3,7 +3,7 @@
 import { loadMigrateConfig } from '../../../shared/config/loader.js';
 import { detectAndRoute } from '../../../version-router.js';
 import { logSystemInfo, ensureHeapSize } from '../../../shared/utils/concurrency.js';
-import logger from '../../../shared/utils/logger.js';
+import logger, { enableFileLogging } from '../../../shared/utils/logger.js';
 import { applyMigrateOptions } from './apply-migrate-options.js';
 import { buildMigratePerfConfig } from './build-migrate-perf-config.js';
 
@@ -16,6 +16,7 @@ export async function handleMigrateAction(options, shutdownCoordinator) {
 
   const perfConfig = buildMigratePerfConfig(config, options);
   ensureHeapSize(perfConfig.maxMemoryMB);
+  enableFileLogging('migrate');
   logSystemInfo(perfConfig);
 
   const { migrateAll, pipelineId } = await detectAndRoute(config.sonarqube);
diff --git a/src/commands/migrate/index.js b/src/commands/migrate/index.js
index bf736899..d9ab35dc 100644
--- a/src/commands/migrate/index.js
+++ b/src/commands/migrate/index.js
@@ -1,6 +1,6 @@
 // -------- Migrate Command --------
 
-import logger, { enableFileLogging } from '../../shared/utils/logger.js';
+import logger from '../../shared/utils/logger.js';
 import { ShutdownCoordinator } from '../../shared/utils/shutdown.js';
 import { handleMigrateAction } from './helpers/handle-migrate-action.js';
 import { handleCommandError } from '../transfer/helpers/handle-command-error.js';
@@ -36,7 +36,6 @@ export function registerMigrateCommand(program) {
 
       try {
         if (options.verbose) logger.level = 'debug';
-        enableFileLogging('migrate');
         logger.info('=== CloudVoyager - Full Organization Migration ===');
         await handleMigrateAction(options, shutdownCoordinator);
         logger.info('=== Migration completed successfully ===');
diff --git a/src/commands/sync-metadata/helpers/handle-sync-metadata-action.js b/src/commands/sync-metadata/helpers/handle-sync-metadata-action.js
index cef4b72a..450be987 100644
--- a/src/commands/sync-metadata/helpers/handle-sync-metadata-action.js
+++ b/src/commands/sync-metadata/helpers/handle-sync-metadata-action.js
@@ -3,7 +3,7 @@
 import { loadMigrateConfig } from '../../../shared/config/loader.js';
 import { detectAndRoute } from '../../../version-router.js';
 import { resolvePerformanceConfig, logSystemInfo, ensureHeapSize } from '../../../shared/utils/concurrency.js';
-import logger from '../../../shared/utils/logger.js';
+import logger, { enableFileLogging } from '../../../shared/utils/logger.js';
 
 export async function handleSyncMetadataAction(options, shutdownCoordinator) {
   const config = await loadMigrateConfig(options.config);
@@ -22,6 +22,7 @@ export async function handleSyncMetadataAction(options, shutdownCoordinator) {
     ...(options.maxMemory && { maxMemoryMB: options.maxMemory })
   });
   ensureHeapSize(perfConfig.maxMemoryMB);
+  enableFileLogging('sync-metadata');
   logSystemInfo(perfConfig);
 
   migrateConfig.dryRun = false;
diff --git a/src/commands/sync-metadata/index.js b/src/commands/sync-metadata/index.js
index 64852936..a2f9cabe 100644
--- a/src/commands/sync-metadata/index.js
+++ b/src/commands/sync-metadata/index.js
@@ -1,6 +1,6 @@
 // -------- Sync Metadata Command --------
 
-import logger, { enableFileLogging } from '../../shared/utils/logger.js';
+import logger from '../../shared/utils/logger.js';
 import { ShutdownCoordinator } from '../../shared/utils/shutdown.js';
 import { handleSyncMetadataAction } from './helpers/handle-sync-metadata-action.js';
 import { handleCommandError } from '../transfer/helpers/handle-command-error.js';
@@ -28,7 +28,6 @@ export function registerSyncMetadataCommand(program) {
 
       try {
         if (options.verbose) logger.level = 'debug';
-        enableFileLogging('sync-metadata');
         logger.info('=== CloudVoyager - Issue & Hotspot Metadata Sync ===');
         await handleSyncMetadataAction(options, shutdownCoordinator);
         logger.info('=== Metadata sync completed successfully ===');
diff --git a/src/commands/transfer/helpers/handle-transfer-action.js b/src/commands/transfer/helpers/handle-transfer-action.js
index 0afe0f76..d4d77a7f 100644
--- a/src/commands/transfer/helpers/handle-transfer-action.js
+++ b/src/commands/transfer/helpers/handle-transfer-action.js
@@ -4,7 +4,7 @@ import { loadConfig, requireProjectKeys } from '../../../shared/config/loader.js
 import { detectAndRoute } from '../../../version-router.js';
 import { resolvePerformanceConfig, logSystemInfo, ensureHeapSize } from '../../../shared/utils/concurrency.js';
 import { ProgressTracker } from '../../../shared/utils/progress.js';
-import logger from '../../../shared/utils/logger.js';
+import logger, { enableFileLogging } from '../../../shared/utils/logger.js';
 
 export async function handleTransferAction(options, shutdownCoordinator) {
   const config = await loadConfig(options.config);
@@ -30,6 +30,7 @@ export async function handleTransferAction(options, shutdownCoordinator) {
     ...(options.maxMemory && { maxMemoryMB: options.maxMemory }),
   });
   ensureHeapSize(perfConfig.maxMemoryMB);
+  enableFileLogging('transfer');
   logSystemInfo(perfConfig);
 
   const { transferProject, pipelineId } = await detectAndRoute(config.sonarqube);
diff --git a/src/commands/transfer/index.js b/src/commands/transfer/index.js
index 5768c076..5401ab53 100644
--- a/src/commands/transfer/index.js
+++ b/src/commands/transfer/index.js
@@ -1,6 +1,6 @@
 // -------- Transfer Command --------
 
-import logger, { enableFileLogging } from '../../shared/utils/logger.js';
+import logger from '../../shared/utils/logger.js';
 import { ShutdownCoordinator } from '../../shared/utils/shutdown.js';
 import { handleTransferAction } from './helpers/handle-transfer-action.js';
 import { handleCommandError } from './helpers/handle-command-error.js';
@@ -30,7 +30,6 @@ export function registerTransferCommand(program) {
 
       try {
         if (options.verbose) logger.level = 'debug';
-        enableFileLogging('transfer');
         await handleTransferAction(options, shutdownCoordinator);
         logger.info('=== Transfer completed successfully ===');
         process.exit(0);
diff --git a/src/commands/verify/helpers/handle-verify-action.js b/src/commands/verify/helpers/handle-verify-action.js
index 061746b5..fad36b20 100644
--- a/src/commands/verify/helpers/handle-verify-action.js
+++ b/src/commands/verify/helpers/handle-verify-action.js
@@ -3,7 +3,7 @@
 import { loadMigrateConfig } from '../../../shared/config/loader.js';
 import { verifyAll } from '../../../shared/verification/verify-pipeline.js';
 import { resolvePerformanceConfig, logSystemInfo, ensureHeapSize } from '../../../shared/utils/concurrency.js';
-import logger from '../../../shared/utils/logger.js';
+import logger, { enableFileLogging } from '../../../shared/utils/logger.js';
 import { parseOnlyComponents } from './parse-only-components.js';
 
 export async function handleVerifyAction(options) {
@@ -21,6 +21,7 @@ export async function handleVerifyAction(options) {
     ...(options.maxMemory && { maxMemoryMB: options.maxMemory })
   });
   ensureHeapSize(perfConfig.maxMemoryMB);
+  enableFileLogging('verify');
   logSystemInfo(perfConfig);
 
   const results = await verifyAll({
diff --git a/src/commands/verify/index.js b/src/commands/verify/index.js
index 08c9f026..713c98a8 100644
--- a/src/commands/verify/index.js
+++ b/src/commands/verify/index.js
@@ -1,6 +1,6 @@
 // -------- Verify Command --------
 
-import logger, { enableFileLogging } from '../../shared/utils/logger.js';
+import logger from '../../shared/utils/logger.js';
 import { CloudVoyagerError } from '../../shared/utils/errors.js';
 import { handleVerifyAction } from './helpers/handle-verify-action.js';
 
@@ -22,7 +22,6 @@ export function registerVerifyCommand(program) {
     .action(async (options) => {
       try {
         if (options.verbose) logger.level = 'debug';
-        enableFileLogging('verify');
         logger.info('=== CloudVoyager - Migration Verification ===');
         await handleVerifyAction(options);
         logger.info('=== Verification completed successfully — all checks passed ===');