diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 60fe57d..14b1e32 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -156,7 +156,7 @@ jobs:
 
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
@@ -216,7 +216,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - uses: actions/setup-python@v4
         with:
@@ -239,7 +239,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index 2883157..005a536 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -12,7 +12,7 @@ jobs:
   pre-commit:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Set up Python 3.12
         uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 2372034..9715bbd 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -48,7 +48,7 @@ jobs:
           rm -rf ./* || true
           rm -rf ./.??* || true
           ls -la ./
-      - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
         with:
           fetch-depth: 0
 
@@ -91,7 +91,7 @@ jobs:
       TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }}
 
     steps:
-      - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
         with:
           fetch-depth: 0