Dependency Dashboard (Autodiscover)

[seqeralabs-renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.

Config Migration Needed

See Config Migration PR: #151.

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

• chore: update actions/stale digest to 5bef64f
• chore: update conda-incubator/setup-miniconda digest to fc2d68f
• chore: update adamrtalbot/detect-nf-test-changes action to v0.0.6
• chore: update actions/checkout action to v4.4.0
• chore: update dependency python to 3.14
• chore: update release-drafter/release-drafter action to v7.7.0
• Click on this checkbox to rebase all open PRs at once

Detected Dependencies

github-actions (7)

.github/actions/get-shards/action.yml (1)

• nf-core/setup-nf-test v1 → [Updates: v2]

.github/actions/nf-test/action.yml (6)

• nf-core/setup-nextflow v2 → [Updates: v3]
• actions/setup-python v5@a26af69be951a213d495a4c3e4e4022e16d87065 → [Updates: v7]
• nf-core/setup-nf-test v1 → [Updates: v2]
• eWaterCycle/setup-apptainer main
• conda-incubator/setup-miniconda v3@505e6394dae86d6a5c7fbb6e3fb8938e3e863830 → [Updates: v4, v3]
• python 3.13 → [Updates: 3.14]

.github/workflows/ci.yml (14)

• actions/checkout v3 → [Updates: v7]
• adamrtalbot/detect-nf-test-changes v0.0.3 → [Updates: v0.0.6]
• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]
• nf-core/setup-nextflow v2 → [Updates: v3]
• actions/setup-python v4 → [Updates: v7]
• actions/cache v3 → [Updates: v6]
• pcolby/tap-summary v1
• mikepenz/action-junit-report v3 → [Updates: v6]
• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]
• actions/setup-python v4 → [Updates: v7]
• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]
• nf-core/setup-nextflow v2 → [Updates: v3]
• python 3.11 → [Updates: 3.14]
• python 3.12 → [Updates: 3.14]

.github/workflows/clean-up.yml (1)

• actions/stale v9@28ca1036281a5e5922ead5184a1bbf96e5fc984e → [Updates: v11, v9]

.github/workflows/linting.yml (3)

• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]
• actions/setup-python v5.6.0@a26af69be951a213d495a4c3e4e4022e16d87065 → [Updates: v7.0.0]
• python 3.12 → [Updates: 3.14]

.github/workflows/nf-test.yml (2)

• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]
• actions/checkout v4.3.1@34e114876b0b11c390a56381ad16ebd13914f8d5 → [Updates: v4.4.0, v7.0.1]

.github/workflows/release-drafter.yml (1)

• release-drafter/release-drafter v7.2.0@5de93583980a40bd78603b6dfdcda5b4df377b32 → [Updates: v7.7.0]