From 1c434f5c35943de16ded38feda240ae222d6b1e1 Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 6 Jul 2026 05:49:04 +0000
Subject: [PATCH 1/3] Update instance repo from cookiecutter template

---
 .cruft.json |  4 ++--
 README.md   | 23 ++++++++++++++++++++++-
 2 files changed, 24 insertions(+), 3 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 0931545..6514f8d 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "6cc246194b7f1e940721bade4aad5fb6c469dcd2",
+  "commit": "e937af7ddaa918b40b21ae006c3599e9dcec41e3",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -37,7 +37,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "6cc246194b7f1e940721bade4aad5fb6c469dcd2"
+      "_commit": "e937af7ddaa918b40b21ae006c3599e9dcec41e3"
     }
   },
   "directory": null
diff --git a/README.md b/README.md
index c009cd7..50f108f 100644
--- a/README.md
+++ b/README.md
@@ -21,19 +21,40 @@ If you don't have Python installed, we recommend installing [uv][].
 There are several alternative options to install cookiecutter-scverse-instance:
 
 <!--
-1) Install the latest release of `cookiecutter-scverse-instance` from [PyPI][]:
+1. Install the latest release of `cookiecutter-scverse-instance` from [PyPI][]:
+
+We recommend using [uv][] to add `cookiecutter-scverse-instance` to your project's virtual environment:
+
+```bash
+uv add cookiecutter-scverse-instance
+```
+
+<details>
+<summary>If you prefer using `pip`:</summary>
 
 ```bash
 pip install cookiecutter-scverse-instance
 ```
+
+</details>
+
 -->
 
 1. Install the latest development version:
 
+```bash
+uv add git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
+```
+
+<details>
+<summary>If you prefer using `pip`:</summary>
+
 ```bash
 pip install git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
 ```
 
+</details>
+
 ## Release notes
 
 See the [changelog][].

From 023796bae51bbd569d1f327b91ce860f56dd2c86 Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 6 Jul 2026 06:03:09 +0000
Subject: [PATCH 2/3] Update instance repo from cookiecutter template

---
 .cruft.json |  4 ++--
 README.md   | 38 +++++++++++++++++++-------------------
 2 files changed, 21 insertions(+), 21 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 6514f8d..a1c65fe 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "e937af7ddaa918b40b21ae006c3599e9dcec41e3",
+  "commit": "182630d42baf03a3946499bf0aa459b6b6877244",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -37,7 +37,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "e937af7ddaa918b40b21ae006c3599e9dcec41e3"
+      "_commit": "182630d42baf03a3946499bf0aa459b6b6877244"
     }
   },
   "directory": null
diff --git a/README.md b/README.md
index 50f108f..86fed1d 100644
--- a/README.md
+++ b/README.md
@@ -23,37 +23,37 @@ There are several alternative options to install cookiecutter-scverse-instance:
 <!--
 1. Install the latest release of `cookiecutter-scverse-instance` from [PyPI][]:
 
-We recommend using [uv][] to add `cookiecutter-scverse-instance` to your project's virtual environment:
+   We recommend using [uv][] to add `cookiecutter-scverse-instance` to your project's virtual environment:
 
-```bash
-uv add cookiecutter-scverse-instance
-```
+   ```bash
+   uv add cookiecutter-scverse-instance
+   ```
 
-<details>
-<summary>If you prefer using `pip`:</summary>
+   <details>
+   <summary>If you prefer using `pip`:</summary>
 
-```bash
-pip install cookiecutter-scverse-instance
-```
+   ```bash
+   pip install cookiecutter-scverse-instance
+   ```
 
-</details>
+   </details>`
 
 -->
 
 1. Install the latest development version:
 
-```bash
-uv add git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
-```
+   ```bash
+   uv add git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
+   ```
 
-<details>
-<summary>If you prefer using `pip`:</summary>
+   <details>
+   <summary>If you prefer using `pip`:</summary>
 
-```bash
-pip install git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
-```
+   ```bash
+   pip install git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
+   ```
 
-</details>
+   </details>
 
 ## Release notes
 

From 47b3515c8612acd4bf1c256f79f6883d4936cd2f Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 6 Jul 2026 08:18:38 +0000
Subject: [PATCH 3/3] Update instance repo from cookiecutter template

---
 .cruft.json | 4 ++--
 README.md   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index a1c65fe..519ed75 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "182630d42baf03a3946499bf0aa459b6b6877244",
+  "commit": "bc8e681b56909458bf28cd1e9d3a7c3cd6449ef4",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -37,7 +37,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "182630d42baf03a3946499bf0aa459b6b6877244"
+      "_commit": "bc8e681b56909458bf28cd1e9d3a7c3cd6449ef4"
     }
   },
   "directory": null
diff --git a/README.md b/README.md
index 86fed1d..0400b86 100644
--- a/README.md
+++ b/README.md
@@ -43,14 +43,14 @@ There are several alternative options to install cookiecutter-scverse-instance:
 1. Install the latest development version:
 
    ```bash
-   uv add git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
+   uv add git+https://github.com/scverse/cookiecutter-scverse-instance.git
    ```
 
    <details>
    <summary>If you prefer using `pip`:</summary>
 
    ```bash
-   pip install git+https://github.com/scverse/cookiecutter-scverse-instance.git@main
+   pip install git+https://github.com/scverse/cookiecutter-scverse-instance.git
    ```
 
    </details>