* **Description**: Complete and document all steps in the AMBER simulation pipeline under `simlify/simulation/amber/`. * **Tasks**: * Implement missing logic in `prep.py` and `topo.py`. * Add SLURM integration if required for AMBER. * Ensure reusability with `simlify/cli/prep`.
Description: Complete and document all steps in the AMBER simulation pipeline under
simlify/simulation/amber/.Tasks:
prep.pyandtopo.py.simlify/cli/prep.