Issues

• Deleting fragment / beads from RMF in PMI 2.0

  salilab/pmi#246 · Filter by author ichem001 opened on Nov 19, 2018
  1

• Allow unambiguous inter-molecular crosslinks in restraints

  enhancement
  salilab/pmi#245 · Filter by author saltzberg opened on Oct 24, 2018
  2

  

• Add crosslink restraint to specific state

  enhancementquestion
  salilab/pmi#238 · Filter by author ichem001 opened on Mar 12, 2018

• PMI2 RMF hierarchies of input and output RMFs different

  salilab/pmi#224 · Filter by author shruthivis opened on Nov 15, 2016

• Clustering function without stat file

  salilab/pmi#222 · Filter by author shruthivis opened on Nov 15, 2016

• MPI number of cores problem for Analysis macro

  salilab/pmi#221 · Filter by author shruthivis opened on Nov 15, 2016

• Clustering and MPI: multiple copy of same models

  salilab/pmi#219 · Filter by author ichem001 opened on Nov 2, 2016
  2

• Set resolution in analysis replica exchange macro

  salilab/pmi#218 · Filter by author shruthivis opened on Oct 25, 2016
  2

• Standardise crosslinking classes

  salilab/pmi#214 · Filter by author sethaxen opened on Oct 7, 2016
  4

  

• Separate IMP.Restraint and PMI restraint classes

  salilab/pmi#211 · Filter by author sethaxen opened on Oct 4, 2016
  2

  

• Add connectivity restraint to BuildSystem macro

  salilab/pmi#203 · Filter by author cgreenberg opened on May 12, 2016
  1

• Analysis Violations class should take into account copy number (ambiguity)

  salilab/pmi#197 · Filter by author shruthivis opened on Apr 22, 2016

• Documentation for crosslink analysis

  salilab/pmi#189 · Filter by author shruthivis opened on Mar 17, 2016

• Add support to clone a state

  salilab/pmi#164 · Filter by author cgreenberg opened on Jan 30, 2016

• Standardization of terms

  salilab/pmi#163 · Filter by author saltzberg opened on Jan 28, 2016
  4

• Functions that could go in the PMI restraint base class

  salilab/pmi#156 · Filter by author cgreenberg opened on Jan 27, 2016
  33

  

• Topology: Molecule.create_clone() should let you pass a structure to read

  salilab/pmi#153 · Filter by author cgreenberg opened on Jan 27, 2016

• DOF: Need better error if you try to add a particle twice to a rigid body

  salilab/pmi#151 · Filter by author cgreenberg opened on Jan 27, 2016

• What to do with selection tuples?

  salilab/pmi#145 · Filter by author cgreenberg opened on Jan 14, 2016
  7

• Give more useful error message if MRC is given where GMM is expected

  salilab/pmi#138 · Filter by author benmwebb opened on Nov 3, 2015
  

• disable ANY movers involving symmetry copies

  salilab/pmi#135 · Filter by author jkosinski opened on Sep 29, 2015
  2

• add "optimized" argument to dof.create_rigid_body

  salilab/pmi#129 · Filter by author jkosinski opened on Aug 17, 2015
  3

• Symmetry constraint: add some checks

  salilab/pmi#126 · Filter by author cgreenberg opened on Aug 12, 2015
  6

• PMI2: should only be able to construct super rigid bodies AFTER rigid bodies

  salilab/pmi#124 · Filter by author cgreenberg opened on Jun 29, 2015

• Switch to using ScoringFunction

  salilab/pmi#120 · Filter by author cgreenberg opened on Jun 21, 2015
  3