When calling get_collectri(organism = "human", split_complexes = FALSE), a following error occurs:
Error in if (.keep) . else select(., -!!evs_col) :
argument is of length zero
I am using BioConductor 3.23, decoupleR 2.17.0, and OmnipathR 4.1.0
sessionInfo()
> sessionInfo()
R version 4.6.0 (2026-04-24 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26200)
Matrix products: default
LAPACK version 3.12.1
locale:
[1] LC_COLLATE=English_United Kingdom.utf8 LC_CTYPE=English_United Kingdom.utf8 LC_MONETARY=English_United Kingdom.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.utf8
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] magrittr_2.0.5 decoupleR_2.17.0 OmnipathR_4.1.0 devtools_2.5.2 usethis_3.2.1
loaded via a namespace (and not attached):
[1] tidyselect_1.2.1 dplyr_1.2.1 blob_1.3.0 R.utils_2.13.0 fastmap_1.2.0 promises_1.5.0 XML_3.99-0.23 digest_0.6.39 timechange_0.4.0
[10] lifecycle_1.0.5 ellipsis_0.3.3 processx_3.9.0 RSQLite_3.53.3 compiler_4.6.0 rlang_1.3.0 config_0.3.2 progress_1.2.3 tools_4.6.0
[19] igraph_2.3.3 yaml_2.3.12 knitr_1.51 prettyunits_1.2.0 bit_4.6.0 pkgbuild_1.4.8 curl_7.1.0 here_1.0.2 xml2_1.6.0
[28] pkgload_1.5.3 BiocParallel_1.46.0 websocket_1.4.4 withr_3.0.3 purrr_1.2.2 desc_1.4.3 R.oo_1.27.1 grid_4.6.0 cli_3.6.6
[37] rmarkdown_2.31 crayon_1.5.3 generics_0.1.4 remotes_2.5.0 otel_0.2.0 rstudioapi_0.19.0 httr_1.4.8 tzdb_0.5.0 sessioninfo_1.2.4
[46] readxl_1.5.0 DBI_1.3.0 cachem_1.1.0 chromote_0.5.1 stringr_1.6.0 rvest_1.0.5 parallel_4.6.0 selectr_0.6-0 cellranger_1.1.0
[55] vctrs_0.7.3 Matrix_1.7-5 jsonlite_2.0.0 callr_3.8.0 hms_1.1.4 bit64_4.8.2 tidyr_1.3.2 glue_1.8.1 parallelly_1.48.0
[64] codetools_0.2-20 lubridate_1.9.5 stringi_1.8.7 later_1.4.8 tibble_3.3.1 logger_0.4.2 pillar_1.11.1 rappdirs_0.3.4 htmltools_0.5.9
[73] R6_2.6.1 httr2_1.2.3 tcltk_4.6.0 rprojroot_2.1.1 vroom_1.7.1 evaluate_1.0.5 lattice_0.22-9 readr_2.2.0 R.methodsS3_1.8.2
[82] backports_1.5.1 memoise_2.0.1 Rcpp_1.1.2 zip_3.0.0 checkmate_2.3.4 xfun_0.59 fs_2.1.0 pkgconfig_2.0.3
When calling
get_collectri(organism = "human", split_complexes = FALSE), a following error occurs:I am using BioConductor 3.23, decoupleR 2.17.0, and OmnipathR 4.1.0
sessionInfo()