diff --git a/.npmrc b/.npmrc
new file mode 100644
index 0000000..40fb0d4
--- /dev/null
+++ b/.npmrc
@@ -0,0 +1 @@
+enable-global-virtual-store=true
diff --git a/e2e/__snapshots__/index.test.ts.snap b/e2e/__snapshots__/index.test.ts.snap
index c3eac50..443fcd8 100644
--- a/e2e/__snapshots__/index.test.ts.snap
+++ b/e2e/__snapshots__/index.test.ts.snap
@@ -2,6 +2,6 @@
 
 exports[`should serialize file content 2`] = `
 "\\"use strict\\";
-const a = \\"<ROOT>/node_modules/<PNPM_INNER>/@rslib/core/dist/index.js\\";
+const a = \\"<PNPM_INNER>/@rslib/core/dist/index.js\\";
 "
 `;
diff --git a/e2e/features.test.ts b/e2e/features.test.ts
index 6900bd2..6b1ff1f 100644
--- a/e2e/features.test.ts
+++ b/e2e/features.test.ts
@@ -1,7 +1,7 @@
 import path from 'node:path';
+import { createSnapshotSerializer } from 'path-serializer';
 import { expect } from 'vitest';
 import { test } from 'vitest';
-import { createSnapshotSerializer } from 'path-serializer';
 
 expect.addSnapshotSerializer(
   createSnapshotSerializer({
@@ -20,7 +20,7 @@ const a = "${require.resolve('@rslib/core')}";
 
   expect(fileContent).toMatchInlineSnapshot(`
     "use strict";
-    const a = "<ROOT>/node_modules/<PNPM_INNER>/@rslib/core/dist/index.js";
+    const a = "<PNPM_INNER>/@rslib/core/dist/index.js";
   `);
 });
 
@@ -34,7 +34,7 @@ function _class_private_method_get(receiver, privateSet, fn) {
 `;
 
   expect(fileContent).toMatchInlineSnapshot(`
-    ;// CONCATENATED MODULE: ../../../../node_modules/<PNPM_INNER>/@swc/helpers/esm/_class_private_method_get.js
+    ;// CONCATENATED MODULE: <PNPM_INNER>/@swc/helpers/esm/_class_private_method_get.js
     function _class_private_method_get(receiver, privateSet, fn) {
         if (!privateSet.has(receiver)) throw new TypeError("attempted to get private field on non-instance");
 
diff --git a/e2e/index.test.ts b/e2e/index.test.ts
index 69324f1..b453206 100644
--- a/e2e/index.test.ts
+++ b/e2e/index.test.ts
@@ -1,7 +1,7 @@
 import { createRequire } from 'node:module';
 import path from 'node:path';
-import { expect, test } from 'vitest';
 import { createSnapshotSerializer } from 'path-serializer';
+import { expect, test } from 'vitest';
 
 const require = createRequire(import.meta.url);
 
@@ -23,7 +23,7 @@ test('should serialize <ROOT> and <WORKSPACE>', () => {
 
 test('should serialize <PNPM_INNER>', () => {
   expect(require.resolve('@rslib/core')).toMatchInlineSnapshot(
-    `"<ROOT>/node_modules/<PNPM_INNER>/@rslib/core/dist/index.js"`,
+    `"<PNPM_INNER>/@rslib/core/dist/index.js"`,
   );
 });
 
@@ -38,7 +38,7 @@ test('should serialize Object', () => {
   const obj = new MyObj(require.resolve('@rslib/core'));
   expect(obj).toMatchInlineSnapshot(`
     MyObj {
-      "attr": "<ROOT>/node_modules/<PNPM_INNER>/@rslib/core/dist/index.js",
+      "attr": "<PNPM_INNER>/@rslib/core/dist/index.js",
     }
   `);
 });
@@ -50,7 +50,7 @@ const a = "${require.resolve('@rslib/core')}";
 
   expect(fileContent).toMatchInlineSnapshot(`
     "\\"use strict\\";
-    const a = \\"<ROOT>/node_modules/<PNPM_INNER>/@rslib/core/dist/index.js\\";
+    const a = \\"<PNPM_INNER>/@rslib/core/dist/index.js\\";
     "
   `);
 
diff --git a/e2e/pnpmGlobalVirtualStore.test.ts b/e2e/pnpmGlobalVirtualStore.test.ts
new file mode 100644
index 0000000..8fe8947
--- /dev/null
+++ b/e2e/pnpmGlobalVirtualStore.test.ts
@@ -0,0 +1,49 @@
+import { createSnapshotSerializer } from 'path-serializer';
+import { expect, test } from 'vitest';
+
+expect.addSnapshotSerializer(
+  createSnapshotSerializer({
+    root: '/Users/user/project',
+  }),
+);
+
+test('should serialize pnpm global virtual store path (posix)', () => {
+  const filePath =
+    '/Users/user/project/node_modules/../../../../../../Library/pnpm/store/v10/links/react/19.2.4/5c6e83be0e5f1f15e83462f0b7655d9d9338d33338bad7cc29bc12f2daa11aa3/node_modules/react/index.js';
+
+  expect(filePath).toMatchInlineSnapshot(`"<PNPM_INNER>/react/index.js"`);
+});
+
+test('should serialize pnpm global virtual store path with cjs (posix)', () => {
+  const filePath =
+    '/Users/user/project/node_modules/../../../../../../Library/pnpm/store/v10/links/react/19.2.4/5c6e83be0e5f1f15e83462f0b7655d9d9338d33338bad7cc29bc12f2daa11aa3/node_modules/react/cjs/react.production.js';
+
+  expect(filePath).toMatchInlineSnapshot(
+    `"<PNPM_INNER>/react/cjs/react.production.js"`,
+  );
+});
+
+test('should serialize pnpm global virtual store path with scoped package', () => {
+  const filePath =
+    '/Users/user/project/node_modules/../../../../../../Library/pnpm/store/v10/links/@babel/core/7.25.0/abc123def456/node_modules/@babel/core/lib/index.js';
+
+  expect(filePath).toMatchInlineSnapshot(
+    `"<PNPM_INNER>/@babel/core/lib/index.js"`,
+  );
+});
+
+test('should serialize pnpm global virtual store path (win32)', () => {
+  const serializer = createSnapshotSerializer({
+    root: 'D:\\user\\project',
+    features: {
+      transformWin32Path: true,
+    },
+  });
+
+  const filePath =
+    'D:\\user\\project\\node_modules\\..\\..\\..\\..\\..\\..\\Library\\pnpm\\store\\v10\\links\\react\\19.2.4\\5c6e83be0e5f1f15e83462f0b7655d9d9338d33338bad7cc29bc12f2daa11aa3\\node_modules\\react\\index.js';
+
+  expect(serializer.serialize(filePath)).toMatchInlineSnapshot(
+    `"\\"<PNPM_INNER>/react/index.js\\""`,
+  );
+});
diff --git a/e2e/pnpmInnerWin32.test.ts b/e2e/pnpmInnerWin32.test.ts
index bb8c83a..855d106 100644
--- a/e2e/pnpmInnerWin32.test.ts
+++ b/e2e/pnpmInnerWin32.test.ts
@@ -1,5 +1,5 @@
-import { expect, test } from 'vitest';
 import { createSnapshotSerializer } from 'path-serializer';
+import { expect, test } from 'vitest';
 
 expect.addSnapshotSerializer(
   createSnapshotSerializer({
@@ -21,7 +21,7 @@ test('should serialize <PNPM_INNER> in win32', () => {
 
   expect(fileContent).toMatchInlineSnapshot(`
     {
-      loader: <ROOT>/node_modules/<PNPM_INNER>/css-loader/utils.ts,
+      loader: <PNPM_INNER>/css-loader/utils.ts,
     }
   `);
 });
@@ -34,7 +34,7 @@ test('should serialize <PNPM_INNER> with webpack path', () => {
 
   expect(fileContent).toMatchInlineSnapshot(`
     {
-      moduleIdentifier: <ROOT>/node_modules/<PNPM_INNER>/css-loader/dist/cjs.js!<WORKSPACE>/tests/fixtures/css/style.css,
+      moduleIdentifier: <PNPM_INNER>/css-loader/dist/cjs.js!<WORKSPACE>/tests/fixtures/css/style.css,
     }
   `);
 });
diff --git a/package.json b/package.json
index 2eeb424..c743186 100644
--- a/package.json
+++ b/package.json
@@ -51,7 +51,7 @@
     "fs-extra": "11.2.0",
     "semver": "7.6.3"
   },
-  "packageManager": "pnpm@9.14.4",
+  "packageManager": "pnpm@10.32.1+sha512.a706938f0e89ac1456b6563eab4edf1d1faf3368d1191fc5c59790e96dc918e4456ab2e67d613de1043d2e8c81f87303e6b40d4ffeca9df15ef1ad567348f2be",
   "publishConfig": {
     "access": "public",
     "registry": "https://registry.npmjs.org/"
diff --git a/src/createSnapshotSerializer.ts b/src/createSnapshotSerializer.ts
index 4ae4bdc..ff74c3f 100644
--- a/src/createSnapshotSerializer.ts
+++ b/src/createSnapshotSerializer.ts
@@ -1,15 +1,12 @@
 import { pathToFileURL } from 'node:url';
 import { applyMatcherReplacement } from './applyMatcherReplacement';
-import {
-  createHomeDirMatchers,
-  createPnpmInnerMatchers,
-  createTmpDirMatchers,
-} from './matchers';
+import { createHomeDirMatchers, createTmpDirMatchers } from './matchers';
 import {
   normalizeCLR,
   normalizeCodeToPosix,
   normalizePathToPosix,
 } from './normalize';
+import { replacePnpmInnerPath } from './pnpm';
 import type { PathMatcher, SnapshotSerializerOptions } from './types';
 
 export interface SnapshotSerializer {
@@ -54,9 +51,6 @@ export function createSnapshotSerializer(
     if (replaceRoot && root) {
       pathMatchers.push({ mark: 'root', match: root });
     }
-    if (replacePnpmInner) {
-      pathMatchers.push(...createPnpmInnerMatchers());
-    }
     if (replaceTmpDir) {
       pathMatchers.push(...createTmpDirMatchers());
     }
@@ -106,6 +100,10 @@ export function createSnapshotSerializer(
 
       replaced = applyMatcherReplacement(pathMatchers, replaced);
 
+      if (replacePnpmInner) {
+        replaced = replacePnpmInnerPath(replaced);
+      }
+
       if (transformCLR) {
         replaced = normalizeCLR(replaced);
       }
diff --git a/src/matchers.ts b/src/matchers.ts
index 0ba3702..38022d6 100644
--- a/src/matchers.ts
+++ b/src/matchers.ts
@@ -18,18 +18,3 @@ export const createHomeDirMatchers = (): PathMatcher[] => {
   homedir && ret.push({ match: homedir, mark: 'home' });
   return ret;
 };
-
-export const createPnpmInnerMatchers = (): PathMatcher[] => {
-  return [
-    // posix
-    {
-      match: /(?<=\/)(\.pnpm\/.+?\/node_modules)(?=\/)/g,
-      mark: 'pnpmInner',
-    },
-    // win32
-    {
-      match: /(?<=\\)(\.pnpm\\.+?\\node_modules)(?=\\)/g,
-      mark: 'pnpmInner',
-    },
-  ];
-};
diff --git a/src/pnpm/index.ts b/src/pnpm/index.ts
new file mode 100644
index 0000000..dfc5fbe
--- /dev/null
+++ b/src/pnpm/index.ts
@@ -0,0 +1 @@
+export { replacePnpmInnerPath } from './replacePnpmInnerPath';
diff --git a/src/pnpm/replacePnpmInnerPath.ts b/src/pnpm/replacePnpmInnerPath.ts
new file mode 100644
index 0000000..11aa667
--- /dev/null
+++ b/src/pnpm/replacePnpmInnerPath.ts
@@ -0,0 +1,38 @@
+const PNPM_INNER_TOKEN = '<PNPM_INNER>';
+const PNPM_INNER_DELIMITERS = /[\s!"']/;
+
+// local virtual store: .pnpm/<pkg>@<ver>/node_modules
+const LOCAL_PNPM_POSIX = /(?<=\/)(\.pnpm\/.+?\/node_modules)(?=\/)/g;
+const LOCAL_PNPM_WIN32 = /(?<=\\)(\.pnpm\\.+?\\node_modules)(?=\\)/g;
+// global virtual store: pnpm/store/<versions>/links/<pkg>/<ver>/<hash>/node_modules
+const GLOBAL_PNPM_POSIX =
+  /(?<=\/)pnpm\/store\/.+?\/links\/.+?\/node_modules(?=\/)/g;
+
+/**
+ * Replace pnpm virtual store paths with `<PNPM_INNER>` and strip
+ * the environment-dependent prefix so that local virtual store
+ * and global virtual store both normalize to `<PNPM_INNER>/pkg/...`.
+ */
+export function replacePnpmInnerPath(str: string): string {
+  const replaced = str
+    .replace(LOCAL_PNPM_POSIX, PNPM_INNER_TOKEN)
+    .replace(LOCAL_PNPM_WIN32, PNPM_INNER_TOKEN)
+    .replace(GLOBAL_PNPM_POSIX, PNPM_INNER_TOKEN);
+
+  // Strip environment-dependent prefix before <PNPM_INNER>
+  // e.g. <ROOT>/node_modules/<PNPM_INNER> → <PNPM_INNER>
+  // Uses string splitting instead of regex to avoid ReDoS.
+  const parts = replaced.split(PNPM_INNER_TOKEN);
+  if (parts.length <= 1) return replaced;
+
+  for (let i = 0; i < parts.length - 1; i++) {
+    const part = parts[i];
+    let j = part.length - 1;
+    while (j >= 0 && !PNPM_INNER_DELIMITERS.test(part[j])) {
+      j--;
+    }
+    parts[i] = part.substring(0, j + 1);
+  }
+
+  return parts.join(PNPM_INNER_TOKEN);
+}