The r4ss package has just revised the column names used in the functions to read SS3 input files (see https://github.com/r4ss/r4ss/releases/tag/v1.50.0).
I notice that atlantisom depends on r4ss and uses the old name convention (e.g. in the section below):
|
ss_data_list$lencomp <- ss_data_list$lencomp[0,c("Yr","Seas","FltSvy","Gender","Part","Nsamp")] |
So it's possible that the r4ss change has broken since the file being read in this line will have mismatched column names from
SS_write_comps():
https://github.com/r4atlantis/atlantisom/blob/master/vignettes/AtlantisToStockAssessment.Rmd#L142. You may wish to make things consistent even if your code doesn't depend on r4ss enough to be broken.
Let me know if there are any questions or you want help on any changes.
The r4ss package has just revised the column names used in the functions to read SS3 input files (see https://github.com/r4ss/r4ss/releases/tag/v1.50.0).
I notice that atlantisom depends on r4ss and uses the old name convention (e.g. in the section below):
atlantisom/R/SS_write_comps.R
Line 25 in 1e5d328
So it's possible that the r4ss change has broken since the file being read in this line will have mismatched column names from
SS_write_comps(): https://github.com/r4atlantis/atlantisom/blob/master/vignettes/AtlantisToStockAssessment.Rmd#L142. You may wish to make things consistent even if your code doesn't depend on r4ss enough to be broken.Let me know if there are any questions or you want help on any changes.