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b/src/components/VisualizeChart/worker.js @@ -1,5 +1,6 @@ /* eslint-disable no-restricted-globals */ import * as druid from '@saehrimnir/druidjs'; +import { createUMAP } from 'embedding-atlas'; import get from 'lodash/get'; const MESSAGE_INTERVAL = 200; @@ -21,7 +22,7 @@ function getVectorType(vector) { return 'unknown'; } -self.onmessage = function (e) { +self.onmessage = async function (e) { let now = new Date().getTime(); const params = e?.data?.params || {}; @@ -90,6 +91,45 @@ self.onmessage = function (e) { const transformedData = D.transform(); self.postMessage({ result: getDataset(transformedData), error: null }); + } else if (algorithm === 'UMAP') { + // For detailed implementation see: + // https://apple.github.io/embedding-atlas/algorithms.html#umap + const count = points.length; + const inputDim = data[0].length; // assume all vectors have the same dimension + const outputDim = 2; + + const flatData = new Float32Array(count * inputDim); + for (let i = 0; i < count; i++) { + flatData.set(new Float32Array(data[i]), i * inputDim); + } + + const umap = await createUMAP(count, inputDim, outputDim, flatData, { + metric: 'cosine', // do we need to make it configurable? + }); + + for (let i = 0; i < 500; i++) { + umap.run(i); + if (Date.now() - now > MESSAGE_INTERVAL) { + now = Date.now(); + const reducedPoints = []; + // get embedding once before the loop + const embedding = umap.embedding; + for (let j = 0; j < count; j++) { + reducedPoints.push([embedding[j * outputDim], embedding[j * outputDim + 1]]); + } + self.postMessage({ result: getDataset(reducedPoints), error: null }); + } + } + + // final embedding + const reducedPoints = []; + const embedding = umap.embedding; + for (let j = 0; j < count; j++) { + reducedPoints.push([embedding[j * outputDim], embedding[j * outputDim + 1]]); + } + + self.postMessage({ result: getDataset(reducedPoints), error: null }); + umap.destroy(); } else { const D = new druid[algorithm](data, {}); // ex params = { perplexity : 50,epsilon :5} const next = D.generator(); // default = 500 iterations