jsmol/simple_old.htm at main · openmopac/jsmol · GitHub

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<!DOCTYPE html>
<html>
<head>
<script type="text/javascript" src="JSmol.min.js"></script>
<script type="text/javascript" src="js/Jmol2.js"></script>
<script type="text/javascript">

// This file simple_old.htm is exactly the same as an old one
// except for the addition of the two JS script tags above and Info below.
// Clearly you could concatenate those two files and make one
// called "Jmol.js" and then not have ANY difference with any older files.
//
// If you have a big site with many HTML files, see comments in js/Jmol2.js

Jmol.Info = {

      jarPath: "java",
      jarFile: "JmolAppletSigned0.jar",
      j2sPath: "j2s",
      use: "HTML5", // could be JAVA or HTML5
			disableJ2SLoadMonitor: false,
			disableInitialConsole: true

}

myCallback = function (a, b, c, d) {
//alert("myCallback a="+a+" b="+b+" c="+c+" d="+d)
}

Models = []

template = "xid='%1';load =%1|%2 (%1)"
function addModel(xxxx, text) {
 Models.push(template.replace(/\%1/g, xxxx).replace(/%2/g, text).split("|"))
}

addModel("1crn", "small")
addModel("1blu","Fe/S")
addModel("1bna","b-DNA")
addModel("1d66","transcription")

</script>
</head>
<body>

<center>


<table><tr><td align=center>

<script type="text/javascript">
//jmolInitialize(".","https://chemapps.stolaf.edu/pe/protexpl/molview/JmolAppletSigned.jar")

jmolInitialize("java","JmolAppletSigned0.jar")

jmolSetCallback("errorCallback","myCallback")

var xxxx = document.location.search
if (xxxx.indexOf("USE=") > 0)xxxx = "";
if (xxxx.length == 5 || xxxx.length == 0) {
	xxxx = (xxxx + "?1crn").substring(1,5)
	script = 'h2oOn=true;set animframecallback "jmolscript:if (!selectionHalos) {select model=_modelNumber}";'
//	+'set errorCallback "myCallback";'
	+'set defaultloadscript "isDssp = false;set defaultVDW babel;if(!h2oOn){display !water}";'
	+'set zoomlarge false;set echo top left;echo loading XXXX...;refresh;'
	+'load "http://www.rcsb.org/pdb/files/XXXX.pdb";set echo top center;echo XXXX;'
	+'spacefill off;wireframe off;cartoons on;color structure;'
	script = script.replace(/XXXX/g, xxxx)
} else {
	script = unescape(xxxx.substring(1))
}

jmolApplet(["450","450"],script)

</script>
</td><td>
<form><!-- (FORM tag is important to automatically set checkbox off when page reloads) -->
<script type="text/javascript">
jmolSetButtonCssClass("\" style='width:160' \"")
jmolSetMenuCssClass("\" style='width:160' \"")
jmolButton("if (!xid) { xid = '1crn'};var x = prompt('Enter a four-digit PDB ID',xid);if (!x) { quit }; xid = x; load @{'=' + x}","Load PDB by ID")
jmolBr()
jmolCheckbox("set pdbAddHydrogens TRUE","set pdbAddHydrogens FALSE","with hydrogens",false)
jmolBr()
jmolCheckbox("set defaultLoadFilter 'biomolecule 1'","set defaultLoadFilter ''","biomolecule 1",false)
jmolBr()
jmolHtml("Examples:")
jmolBr()
jmolMenu(Models)
jmolBr()
jmolButton("if (!molname) { molname = 'tylenol'};var x = prompt('Enter the name or identifier (SMILES, InChI, CAS) of a molecule',molname);if (!x) { quit }; molname = x; load @{'$' + molname}","Load MOL by NAME")
jmolBr()
jmolButton("load ?","Load URL")
jmolBr()
jmolButton("load ?","Load FILE")
jmolBr()
jmolButton("script ?.spt","Load SCRIPT")
jmolBr()
jmolBr()
jmolCheckbox("h2oOn=true;display *","h2oOn=false;display !water","display water",true)
jmolBr()
jmolBr()
jmolButton("write FILE ?","Save FILE")
jmolBr()
jmolButton("write image jsmol.jpg","Save JPG")
jmolBr()
jmolButton("write image jsmol.png","Save PNG")
jmolBr()
jmolButton("write jsmol.jmol","Save Jmol")
jmolBr()
jmolButton("write PNGJ jsmol.png","Save PNG+Jmol")
jmolBr()
jmolButton("write state jsmol.spt","Save STATE")
jmolBr()


</script>
</form>
</td></tr>

<tr><td align=center>


<script type="text/javascript">
jmolBr()
jmolSetButtonCssClass("\" style='width:120' \"")
jmolButton("color cpk")
jmolButton("color group")
jmolButton("color amino")
jmolButton("color structure")
jmolBr()
jmolButton("trace only")
jmolButton("cartoon only")
jmolButton("backbone only")
jmolButton("spacefill only;spacefill 23%;wireframe 0.15","ball&stick")
jmolBr()
jmolSetButtonCssClass("\" style='width:60' \"")
jmolButton("Model")
jmolSetButtonCssClass("\" style='width:50' \"")
jmolButton("model; if (!isDssp) { save structure s1; isDssp = true; calculate structure DSSP;cartoons only;color structure}", "DSSP")
jmolSetButtonCssClass("\" style='width:50' \"")
jmolButton("model; if (isDssp) { restore structure s1; isDssp = false; cartoons only;color structure}", "Auth")
jmolSetButtonCssClass("\" style='width:160' \"")
jmolButton("Ramachandran relative")
jmolButton("Quaternion difference")
jmolBr()
jmolSetButtonCssClass("\" style='width:100' \"")
jmolButton("console")
jmolCommandInput()
</script>

</td></tr></table>

</body>
</html>