From 5bf7c73fe1982f38c551a655adab12309b8c1f15 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Aug 2026 22:08:36 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: 6fec9b7edb08fd9989088709d864a7826dc74e80 → 39d9ac5938dadb73df0564a45f163e25ff9fa6e2](https://github.com/astral-sh/ruff-pre-commit/compare/6fec9b7edb08fd9989088709d864a7826dc74e80...39d9ac5938dadb73df0564a45f163e25ff9fa6e2)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index de28b50f2..b3a2b9b36 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -19,7 +19,7 @@ repos:
       - id: rst-directive-colons
       - id: rst-inline-touching-normal
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 6fec9b7edb08fd9989088709d864a7826dc74e80  # frozen: v0.15.12
+    rev: 39d9ac5938dadb73df0564a45f163e25ff9fa6e2  # frozen: v0.16.1
     hooks:
       - id: ruff-check
         args: [ --fix, --show-fixes ]

From dc45aa4b3d4785f48b6397a08f012beabdfe7755 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Aug 2026 22:12:01 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 wrapper/src/fmriprep_docker/__main__.py | 29 ++++++++++++++-----------
 1 file changed, 16 insertions(+), 13 deletions(-)

diff --git a/wrapper/src/fmriprep_docker/__main__.py b/wrapper/src/fmriprep_docker/__main__.py
index 17e37f82b..a10ac0d00 100755
--- a/wrapper/src/fmriprep_docker/__main__.py
+++ b/wrapper/src/fmriprep_docker/__main__.py
@@ -145,9 +145,12 @@ def _get_posargs(usage):
             line = targ.lstrip()
             if line.startswith('usage'):
                 continue
-            if line[0].isalnum() or line[0] == '{':
-                posargs.append(line)
-            elif line[0] == '[' and (line[1].isalnum() or line[1] == '{'):
+            if (
+                line[0].isalnum()
+                or line[0] == '{'
+                or line[0] == '['
+                and (line[1].isalnum() or line[1] == '{')
+            ):
                 posargs.append(line)
         return ' '.join(posargs)
 
@@ -291,7 +294,7 @@ def _is_file(path, parser):
         '--image',
         metavar='IMG',
         type=str,
-        default='nipreps/fmriprep:{}'.format(__version__),
+        default=f'nipreps/fmriprep:{__version__}',
         help='image name',
     )
 
@@ -418,7 +421,7 @@ def main():
     check = check_docker()
     if check < 1:
         if opts.version:
-            print('fmriprep wrapper {!s}'.format(__version__))
+            print(f'fmriprep wrapper {__version__!s}')
         if opts.help:
             parser.print_help()
         if check == -1:
@@ -431,7 +434,7 @@ def main():
     if not check_image(opts.image):
         resp = 'Y'
         if opts.version:
-            print('fmriprep wrapper {!s}'.format(__version__))
+            print(f'fmriprep wrapper {__version__!s}')
         if opts.help:
             parser.print_help()
         if opts.version or opts.help:
@@ -484,7 +487,7 @@ def main():
     # Patch working repositories into installed package directories
     if opts.patch:
         for pkg, repo_path in opts.patch.items():
-            command.extend(['-v', '{}:{}/{}:ro'.format(repo_path, PKG_PATH, pkg)])
+            command.extend(['-v', f'{repo_path}:{PKG_PATH}/{pkg}:ro'])
 
     if opts.env:
         for envvar in opts.env:
@@ -494,7 +497,7 @@ def main():
         command.extend(['-u', opts.user])
 
     if opts.fs_license_file:
-        command.extend(['-v', '{}:/opt/freesurfer/license.txt:ro'.format(opts.fs_license_file)])
+        command.extend(['-v', f'{opts.fs_license_file}:/opt/freesurfer/license.txt:ro'])
 
     main_args = []
     if opts.bids_dir:
@@ -509,19 +512,19 @@ def main():
     main_args.append(opts.analysis_level)
 
     if opts.fs_subjects_dir:
-        command.extend(['-v', '{}:/opt/subjects'.format(opts.fs_subjects_dir)])
+        command.extend(['-v', f'{opts.fs_subjects_dir}:/opt/subjects'])
         unknown_args.extend(['--fs-subjects-dir', '/opt/subjects'])
 
     if opts.config_file:
-        command.extend(['-v', '{}:/tmp/config.toml'.format(opts.config_file)])
+        command.extend(['-v', f'{opts.config_file}:/tmp/config.toml'])
         unknown_args.extend(['--config-file', '/tmp/config.toml'])
 
     # Patch derivatives for searching
     if opts.derivatives:
         unknown_args.append('--derivatives')
         for deriv, deriv_path in opts.derivatives.items():
-            command.extend(['-v', '{}:/deriv/{}:ro'.format(deriv_path, deriv)])
-            unknown_args.append('/deriv/{}'.format(deriv))
+            command.extend(['-v', f'{deriv_path}:/deriv/{deriv}:ro'])
+            unknown_args.append(f'/deriv/{deriv}')
 
     if opts.work_dir:
         command.extend(['-v', ':'.join((opts.work_dir, '/scratch'))])
@@ -593,7 +596,7 @@ def main():
     print('RUNNING: ' + ' '.join(command))
     ret = subprocess.run(command)
     if ret.returncode:
-        print('fMRIPrep: Please report errors to {}'.format(__bugreports__))
+        print(f'fMRIPrep: Please report errors to {__bugreports__}')
     return ret.returncode