Under https://fmriprep.org/en/stable/usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-freesurfer-preprocessing
The help says:
--submm-recon, --no-submm-recon
Enable or disable sub-millimeter (hi-res) reconstruction.
Default: True
To me, this is ambiguous as to whether sub-mm recon is used by default or not.
Seems to me you only need one of --no-sub-recon needed or --submm-recon
I find the use of the Default: True / False for options like this confusing, because it's not immediately obvious (to me) whether the True refers to the actual thing being turned on or off (ie hi-res reconstruction), or whether it is the default value of
a flag eg no-submm-recon
In other options, the default value is something that can be specified on the command line, eg --skull-strip-t1w force so to give a default value where one is not needed seems inconsistent.
I naturally assume that if there is an option to turn off something, then that something is on by default, so specifying the default is not necessary.
If a default is wanted, I would prefer something like
Default: sub-millimeter reconstruction is enabled.
Thanks
Under https://fmriprep.org/en/stable/usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-freesurfer-preprocessing
The help says:
To me, this is ambiguous as to whether sub-mm recon is used by default or not.
Seems to me you only need one of
--no-sub-recon neededor--submm-reconI find the use of the Default: True / False for options like this confusing, because it's not immediately obvious (to me) whether the True refers to the actual thing being turned on or off (ie hi-res reconstruction), or whether it is the default value of
a flag eg
no-submm-reconIn other options, the default value is something that can be specified on the command line, eg
--skull-strip-t1w forceso to give a default value where one is not needed seems inconsistent.I naturally assume that if there is an option to turn off something, then that something is on by default, so specifying the default is not necessary.
If a default is wanted, I would prefer something like
Default: sub-millimeter reconstruction is enabled.
Thanks