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Fieldmap for session 2 disregarded #3664

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Fieldmap for session 2 disregarded#3664
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bug

Description

@anders-s-olsen
anders-s-olsen
opened on Aug 4, 2026

What happened?

In a simple setup with 1 subject with 2 sessions (ses-BL and ses-FU), each session having a T1, fieldmap, and one func scan, fmriprep finishes without reported errors but the output shows that the func scan for ses-BL was fieldmap-corrected while the func scan for ses-FU was not. Seemingly no relevant differences in the json for the two fieldmap scans (nor the func scans for the matter). I checked the "IntendedFor"-fields. Reverting from 25.2.5 to 25.1.3 fixed the issue. I tried both with and without "--subject-anatomical-reference sessionwise"

What command did you use?

apptainer run --cleanenv -B ${bids_top_folder}:${bids_top_folder} -B ${work_dir1}:${work_dir1} -B ${output_dir_topfolder}:${output_dir_topfolder} -B ${local_dir}:${local_dir} \
            $fmriprep_img_file $bids_dir $output_dir participant \
            --participant-label ${sub} \
            --cifti-output \
            --fs-license-file $fs_license_file \
            --output-spaces ${std_space1}:res-2 \
            --n_cpus 8 \
            -w ${work_dir1} \
            --stop-on-first-crash \
            --bids-filter-file $bids_filter_file \
            --me-output-echos \
            --fs-subjects-dir $fastsurfer_dir \
            --subject-anatomical-reference sessionwise

Bids filter is 

{
    "fmap": {"datatype": "fmap"},
    "bold": {"datatype": "func", "suffix": "bold"},
    "sbref": {"datatype": "func", "suffix": "sbref"},
    "flair": {"datatype": "anat", "suffix": "FLAIR"},
    "t1w": {"datatype": "anat","reconstruction": "norm","suffix": "T1w"},
    "t2w": {"datatype": "anat","reconstruction": "norm","suffix": "T2w"},
    "roi": {"datatype": "anat", "suffix": "roi"}
}

What version of fMRIPrep are you running?

25.2.5

How are you running fMRIPrep?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

FreeSurfer

Please copy and paste any relevant log output.

**Tree for raw data directory**

├── dataset_description.json
├── participants.json
├── participants.tsv
├── sub-51099
│   ├── ses-BL
│   │   ├── anat
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-normdiscorr2d_T1w.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-normdiscorr2d_T1w.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_T1w.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_T1w.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-space_rec-normdiscorr2d_T2w.json
│   │   │   ├── sub-51099_ses-BL_acq-space_rec-normdiscorr2d_T2w.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-space_rec-norm_T2w.json
│   │   │   └── sub-51099_ses-BL_acq-space_rec-norm_T2w.nii.gz
│   │   ├── fmap
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_magnitude1.json
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_magnitude1.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_magnitude2.json
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_magnitude2.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_phasediff.json
│   │   │   └── sub-51099_ses-BL_acq-gre_run-1_phasediff.nii.gz
│   │   └── func
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_bold.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_bold.nii.gz
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_sbref.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_sbref.nii.gz
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_bold.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_bold.nii.gz
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_sbref.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_sbref.nii.gz
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_bold.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_bold.nii.gz
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_sbref.json
│   │       ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_sbref.nii.gz
│   │       └── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_events.tsv
│   └── ses-FU
│       ├── anat
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-normdiscorr2d_T1w.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-normdiscorr2d_T1w.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_T1w.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_T1w.nii.gz
│       │   ├── sub-51099_ses-FU_acq-space_rec-normdiscorr2d_T2w.json
│       │   ├── sub-51099_ses-FU_acq-space_rec-normdiscorr2d_T2w.nii.gz
│       │   ├── sub-51099_ses-FU_acq-space_rec-norm_T2w.json
│       │   └── sub-51099_ses-FU_acq-space_rec-norm_T2w.nii.gz
│       ├── fmap
│       │   ├── sub-51099_ses-FU_acq-gre_run-1_magnitude1.json
│       │   ├── sub-51099_ses-FU_acq-gre_run-1_magnitude1.nii.gz
│       │   ├── sub-51099_ses-FU_acq-gre_run-1_magnitude2.json
│       │   ├── sub-51099_ses-FU_acq-gre_run-1_magnitude2.nii.gz
│       │   ├── sub-51099_ses-FU_acq-gre_run-1_phasediff.json
│       │   └── sub-51099_ses-FU_acq-gre_run-1_phasediff.nii.gz
│       └── func
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_bold.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_bold.nii.gz
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_sbref.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_sbref.nii.gz
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_bold.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_bold.nii.gz
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_sbref.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_sbref.nii.gz
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_bold.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_bold.nii.gz
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_sbref.json
│           ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_sbref.nii.gz
│           └── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_events.tsv
└── task-breath_events.json

**Tree for fmriprep output**
├── dataset_description.json
├── desc-aparcaseg_dseg.tsv
├── desc-aseg_dseg.tsv
├── logs
│   ├── CITATION.bib
│   ├── CITATION.html
│   ├── CITATION.md
│   └── CITATION.tex
├── sub-51099
│   ├── figures
│   │   ├── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-phasediff_fieldmap.svg
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-about_T1w.html
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-conform_T1w.html
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-reconall_T1w.svg
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-summary_T1w.html
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_dseg.svg
│   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_T1w.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-carpetplot_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-compcorvar_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-confoundcorr_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-coreg_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-fmapCoreg_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-rois_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-sdc_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-summary_bold.html
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-t2scomp_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-t2starhist_bold.svg
│   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-validation_bold.html
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-about_T1w.html
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-conform_T1w.html
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-reconall_T1w.svg
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-summary_T1w.html
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_dseg.svg
│   │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_T1w.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-carpetplot_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-compcorvar_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-confoundcorr_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-coreg_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-rois_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-summary_bold.html
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-t2scomp_bold.svg
│   │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-t2starhist_bold.svg
│   │   └── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-validation_bold.html
│   ├── ses-BL
│   │   ├── anat
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-aparcaseg_dseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-aseg_dseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-brain_mask.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-brain_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-preproc_T1w.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-preproc_T1w.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-ribbon_mask.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_desc-ribbon_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_dseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-fsnative_to-T1w_mode-image_xfm.txt
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-MNI152NLin6Asym_to-T1w_mode-image_xfm.h5
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-T1w_to-fsnative_mode-image_xfm.txt
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_from-T1w_to-MNI152NLin6Asym_mode-image_xfm.h5
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_curv.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_desc-cortex_mask.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_desc-cortex_mask.label.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_inflated.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_midthickness.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_pial.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsaverage_desc-reg_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_midthickness.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_pial.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_white.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsLR_desc-msmsulc_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_space-fsLR_desc-reg_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_sulc.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_thickness.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-L_white.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_curv.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_desc-cortex_mask.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_desc-cortex_mask.label.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_inflated.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_midthickness.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_pial.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsaverage_desc-reg_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_midthickness.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_pial.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_white.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsLR_desc-msmsulc_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_space-fsLR_desc-reg_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_sphere.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_sulc.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_thickness.shape.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_hemi-R_white.surf.gii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_label-CSF_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_label-GM_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_label-WM_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_curv.dscalar.nii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_curv.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_sulc.dscalar.nii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_sulc.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_thickness.dscalar.nii
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-fsLR_den-91k_thickness.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_dseg.json
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_dseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-CSF_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-GM_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-WM_probseg.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-space_rec-norm_desc-preproc_T2w.json
│   │   │   └── sub-51099_ses-BL_acq-space_rec-norm_desc-preproc_T2w.nii.gz
│   │   ├── fmap
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-brain_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-coeff_fieldmap.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-magnitude_fieldmap.nii.gz
│   │   │   ├── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-preproc_fieldmap.json
│   │   │   └── sub-51099_ses-BL_acq-gre_run-1_fmapid-auto00000_desc-preproc_fieldmap.nii.gz
│   │   ├── func
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-brain_mask.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-brain_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-confounds_timeseries.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-confounds_timeseries.tsv
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-coreg_boldref.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-coreg_boldref.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-hmc_boldref.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_desc-hmc_boldref.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_desc-preproc_bold.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-1_desc-preproc_bold.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_desc-preproc_bold.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-2_desc-preproc_bold.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_desc-preproc_bold.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_echo-3_desc-preproc_bold.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-auto00000_mode-image_desc-fmap_xfm.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-auto00000_mode-image_desc-fmap_xfm.txt
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-T1w_mode-image_desc-coreg_xfm.txt
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-orig_to-boldref_mode-image_desc-hmc_xfm.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-fsLR_den-91k_bold.dtseries.nii
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-fsLR_den-91k_bold.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_boldref.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_boldref.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
│   │   │   ├── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_T2starmap.json
│   │   │   └── sub-51099_ses-BL_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_T2starmap.nii.gz
│   │   └── log
│   │       └── 20260723-141439_092ce2fe-e9b6-467b-adb2-abc726d49121
│   │           └── fmriprep.toml
│   └── ses-FU
│       ├── anat
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-aparcaseg_dseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-aseg_dseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-brain_mask.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-brain_mask.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-preproc_T1w.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-preproc_T1w.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-ribbon_mask.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_desc-ribbon_mask.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_dseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-fsnative_to-T1w_mode-image_xfm.txt
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-MNI152NLin6Asym_to-T1w_mode-image_xfm.h5
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-T1w_to-fsnative_mode-image_xfm.txt
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_from-T1w_to-MNI152NLin6Asym_mode-image_xfm.h5
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_curv.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_desc-cortex_mask.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_desc-cortex_mask.label.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_inflated.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_midthickness.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_pial.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsaverage_desc-reg_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_midthickness.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_pial.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsLR_den-32k_white.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsLR_desc-msmsulc_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_space-fsLR_desc-reg_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_sulc.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_thickness.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-L_white.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_curv.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_desc-cortex_mask.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_desc-cortex_mask.label.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_inflated.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_midthickness.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_pial.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsaverage_desc-reg_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_midthickness.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_pial.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsLR_den-32k_white.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsLR_desc-msmsulc_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_space-fsLR_desc-reg_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_sphere.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_sulc.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_thickness.shape.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_hemi-R_white.surf.gii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_label-CSF_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_label-GM_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_label-WM_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_curv.dscalar.nii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_curv.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_sulc.dscalar.nii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_sulc.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_thickness.dscalar.nii
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-fsLR_den-91k_thickness.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_dseg.json
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_dseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-CSF_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-GM_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-mprage_rec-norm_space-MNI152NLin2009cAsym_res-2_label-WM_probseg.nii.gz
│       │   ├── sub-51099_ses-FU_acq-space_rec-norm_desc-preproc_T2w.json
│       │   └── sub-51099_ses-FU_acq-space_rec-norm_desc-preproc_T2w.nii.gz
│       ├── func
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-brain_mask.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-brain_mask.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-confounds_timeseries.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-confounds_timeseries.tsv
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-coreg_boldref.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-coreg_boldref.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-hmc_boldref.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_desc-hmc_boldref.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_desc-preproc_bold.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-1_desc-preproc_bold.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_desc-preproc_bold.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-2_desc-preproc_bold.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_desc-preproc_bold.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_echo-3_desc-preproc_bold.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_from-boldref_to-T1w_mode-image_desc-coreg_xfm.txt
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_from-orig_to-boldref_mode-image_desc-hmc_xfm.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-fsLR_den-91k_bold.dtseries.nii
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-fsLR_den-91k_bold.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_boldref.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_boldref.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz
│       │   ├── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_T2starmap.json
│       │   └── sub-51099_ses-FU_task-breath_acq-mb_dir-AP_run-1_space-MNI152NLin2009cAsym_res-2_T2starmap.nii.gz
│       └── log
│           └── 20260723-141439_092ce2fe-e9b6-467b-adb2-abc726d49121
│               └── fmriprep.toml
└── sub-51099.html

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