BUG Fix __check_ifile to accept Filename/SequenceSet paths (Rust) #14

	name: Build Rust

	on:
	push:
	branches: [rust-migration]
	pull_request:
	branches: [rust-migration]

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: dtolnay/rust-toolchain@stable
	with:
	components: rustfmt
	- uses: Swatinem/rust-cache@v2
	- name: Format check
	run: cargo fmt --all -- --check
	- name: Build
	run: cargo build --workspace --all-targets
	- name: Unit tests
	run: cargo test --workspace

	# Parity smoke test: run the functional suite against the Rust binary. The external tools
	# (samtools/bwa/minimap2/prodigal/megahit) are provided by the pinned pixi environment so the
	# fixtures line up with the same tool versions we use locally.
	functional-parity:
	runs-on: ubuntu-latest
	needs: build
	steps:
	- uses: actions/checkout@v4
	- uses: dtolnay/rust-toolchain@stable
	- uses: Swatinem/rust-cache@v2
	- uses: prefix-dev/setup-pixi@v0.8.1
	with:
	environments: default
	- name: Build Rust ngless
	run: cargo build --release
	- name: Run functional tests against the Rust binary
	run: pixi run --environment default bash -c 'NGLESS_BIN="$PWD/target/release/ngless" ./run-tests.sh'

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