diff --git a/pyproject.toml b/pyproject.toml
index 4c762f7..510e875 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -15,61 +15,61 @@ dependencies = [
   "ujson>=5.13.0",
   "pydantic>=2.10.6",
   "python-dotenv>=1.0.1",
-  "openai>=1.63.2",
-  "anthropic>=0.52.0",
-  "google-genai>=1.0.0",
+  "openai>=2.45.0",
+  "anthropic>=0.116.0",
+  "google-genai>=2.11.0",
   "jsonref>=1.1.0",
   # console
-  "click>=8.1.8",
+  "click>=8.4.2",
   "rich>=13.9.4",
   "textual-image>=0.7.0",
   # pyimagej
   "pyimagej>=1.5.0",
-  "ipython>=8.31.0",
-  "ipykernel>=6.29.5",
+  "ipython>=9.15.0",
+  "ipykernel>=7.3.0",
   "jupyter-client>=8.6.3",
   # rag
   "wikipedia>=1.4.0",
-  "selenium>=4.27.1",
-  "beautifulsoup4>=4.12.3",
-  "faiss-cpu>=1.14.2",
+  "selenium>=4.46.0",
+  "beautifulsoup4>=4.15.0",
+  "faiss-cpu>=1.14.3",
   "langchain-community>=0.4.2",
   "langchain-huggingface>=1.2.2",
   "langchain-text-splitters>=1.1.2",
-  "pymupdf>=1.27.2.3",
-  "sentence-transformers>=5.5.1",
-  "unstructured>=0.21.5",
+  "pymupdf>=1.28.0",
+  "sentence-transformers>=5.6.0",
+  "unstructured>=0.24.1",
   # tools
   "scikit-image>=0.25.2",
   "biapy>=3.5.6",
-  "matplotlib>=3.10.3",
+  "matplotlib>=3.11.0",
   "cellpose==3.1.1.2",
-  "torch>=2.7.1",
+  "torch>=2.13.0",
   "csbdeep>=0.8.1",
   "xarray==2024.11.0",
   "stardist>=0.9.1",
-  "timm>=1.0.14",
-  "tensorflow>=2.18.1",
+  "timm>=1.0.28",
+  "tensorflow>=2.21.0",
   "torchmetrics>=1.7.3",
   "pytorch-msssim>=1.0.0",
-  "langchain-core>=1.4.0",
+  "langchain-core>=1.4.9",
   "napari-process-points-and-surfaces>=0.5.0",
   "opencv-python>=4.11.0.86",
   "opencv-contrib-python>=4.11.0.86",
   "pyclesperanto-prototype>=0.24.5",
   "trackpy>=0.6.4",
-  "tavily-python>=0.7.10",
+  "tavily-python>=0.7.26",
   "seaborn>=0.13.2",
   "plotly>=5.24.1",
   "kaleido>=1.0.0",
-  "altair>=5.5.0",
-  "holoviews>=1.21.0",
-  "bokeh>=3.7.3",
-  "pygal>=3.0.5",
-  "plotly-resampler>=0.10.0",
+  "altair>=6.2.2",
+  "holoviews>=1.23.1",
+  "bokeh>=3.9.1",
+  "pygal>=3.1.3",
+  "plotly-resampler>=0.11.0",
   "langfuse>=4.0.0",
-  "opentelemetry-instrumentation-anthropic>=0.40.0",
-  "openinference-instrumentation-google-genai>=0.1.0",
+  "opentelemetry-instrumentation-anthropic>=0.62.1",
+  "openinference-instrumentation-google-genai>=1.2.0",
   "imageio>=2.37.0",
   "tifffile>=2025.1.10",
   "pystackreg>=0.2.8",
@@ -78,7 +78,7 @@ dependencies = [
 ]
 
 [dependency-groups]
-dev = ["pytest>=8.3.4", "pytest-cov>=6.0.0", "ruff>=0.11.4"]
+dev = ["pytest>=9.1.1", "pytest-cov>=6.0.0", "ruff>=0.15.21"]
 
 [tool.pytest.ini_options]
 addopts = "-p no:napari"
diff --git a/uv.lock b/uv.lock
index 73bcb9f..9b2b064 100644
--- a/uv.lock
+++ b/uv.lock
@@ -131,7 +131,7 @@ wheels = [
 
 [[package]]
 name = "altair"
-version = "6.1.0"
+version = "6.2.2"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "jinja2" },
@@ -140,9 +140,9 @@ dependencies = [
     { name = "packaging" },
     { name = "typing-extensions" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/3a/1e/365a9144db3254f86f1b974660b9ede1e9a38c9dc0730e4a9b1192eec5d6/altair-6.1.0.tar.gz", hash = "sha256:dda699216cf85b040d968ae5a569ad45957616811e38760a85e5118269daca67", size = 765519, upload-time = "2026-04-21T13:08:46.44Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/06/a1/5e6cc638a66da48cfc89a79c2f4810dfec00b63385f9b009ab1f069779bb/altair-6.2.2.tar.gz", hash = "sha256:a1ff9d9cfe81c75414641826312b9471780e19d39293ba0b012933f6b6cba0fe", size = 766606, upload-time = "2026-06-23T12:47:13.384Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/ce/63/5dacc8d8306c715088b897a479e551bc0779fd2f0f26c97fec5e36542b4e/altair-6.1.0-py3-none-any.whl", hash = "sha256:fdf5fd939512e5b2fc4441c82dfd2635e706defbd037db0ac429ef5ddce66c3b", size = 796996, upload-time = "2026-04-21T13:08:48.549Z" },
+    { url = "https://files.pythonhosted.org/packages/e3/99/d6031f4f146298951c46b1bf1cc160c2a63f6e44b3c13a30054add100d5f/altair-6.2.2-py3-none-any.whl", hash = "sha256:94014f8ad8617c3cb163d1137359cd6db5ba134b9b46d93cfd8b609fd245a583", size = 797613, upload-time = "2026-06-23T12:47:11.451Z" },
 ]
 
 [[package]]
@@ -165,7 +165,7 @@ wheels = [
 
 [[package]]
 name = "anthropic"
-version = "0.109.1"
+version = "0.116.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "anyio" },
@@ -177,9 +177,9 @@ dependencies = [
     { name = "sniffio" },
     { name = "typing-extensions" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/54/0b/ce24a4f275573f5e436ca954faca60c759d58ed152b8fa36a1e3b888e261/anthropic-0.109.1.tar.gz", hash = "sha256:83e06b3d9d40ff5898f588020e0cc4e42187de954549a3b5fbe6e2685a09c785", size = 927569, upload-time = "2026-06-09T23:55:24.884Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/66/a2/d31f14e28d49bae983a3634e38dfb4b31c50110b5e403596c5c6a20b23f8/anthropic-0.116.0.tar.gz", hash = "sha256:5fc248fbb9fe03ef686f8a774f81586bca31a043260aab88b387ea3660f4a396", size = 949149, upload-time = "2026-07-02T19:08:10.534Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/91/0f/a6110d713370bc92f074a622f8a5ebdec7e92360149b1048dca258a07b2f/anthropic-0.109.1-py3-none-any.whl", hash = "sha256:ce7d94a7657f2aa29338cca448945eac621b4f62c1794cf461cb32847223e9b8", size = 923851, upload-time = "2026-06-09T23:55:23.348Z" },
+    { url = "https://files.pythonhosted.org/packages/c7/dd/2a1e81cf1b163acc340afc4ec74ed1d86f5eed1a809fabdeed3e0997b346/anthropic-0.116.0-py3-none-any.whl", hash = "sha256:6c0a7698e8d652455da3499978279bb2588c7264d0a35be3666009a4258c8256", size = 956896, upload-time = "2026-07-02T19:08:08.756Z" },
 ]
 
 [[package]]
@@ -326,15 +326,15 @@ wheels = [
 
 [[package]]
 name = "beautifulsoup4"
-version = "4.14.3"
+version = "4.15.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "soupsieve" },
     { name = "typing-extensions" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/c3/b0/1c6a16426d389813b48d95e26898aff79abbde42ad353958ad95cc8c9b21/beautifulsoup4-4.14.3.tar.gz", hash = "sha256:6292b1c5186d356bba669ef9f7f051757099565ad9ada5dd630bd9de5fa7fb86", size = 627737, upload-time = "2025-11-30T15:08:26.084Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/43/65/318323f98dbee45d42dff61d8f047181bc6f2268a9068cfad035a46be5af/beautifulsoup4-4.15.0.tar.gz", hash = "sha256:288e3ca7d54b06f2ac191970bc275c1939cb46d450b255bf6718b04aa37ab4f7", size = 632571, upload-time = "2026-06-07T16:44:20.453Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/1a/39/47f9197bdd44df24d67ac8893641e16f386c984a0619ef2ee4c51fbbc019/beautifulsoup4-4.14.3-py3-none-any.whl", hash = "sha256:0918bfe44902e6ad8d57732ba310582e98da931428d231a5ecb9e7c703a735bb", size = 107721, upload-time = "2025-11-30T15:08:24.087Z" },
+    { url = "https://files.pythonhosted.org/packages/88/c6/92fcd42f1ba33e1184263f25bfabf3d27c383410470f169e4b8163bf9c17/beautifulsoup4-4.15.0-py3-none-any.whl", hash = "sha256:d6f88de62e1d4e38ecb1077eb9724cd0eff29d2a08ca16a401e9b9e93f117cf9", size = 109924, upload-time = "2026-06-07T16:44:21.566Z" },
 ]
 
 [[package]]
@@ -447,7 +447,7 @@ wheels = [
 
 [[package]]
 name = "bokeh"
-version = "3.9.0"
+version = "3.9.1"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "contourpy" },
@@ -460,9 +460,9 @@ dependencies = [
     { name = "tornado", marker = "sys_platform != 'emscripten'" },
     { name = "xyzservices" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/bf/0d/fabb70707646217e4b0e3943e05730eab8c1f7b7e7485145f8594b52e606/bokeh-3.9.0.tar.gz", hash = "sha256:775219714a8496973ddbae16b1861606ba19fe670a421e4d43267b41148e07a3", size = 5740345, upload-time = "2026-03-11T17:58:34.062Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/fc/cc/754521e919aab05982f126b7702c0a253341ef6b400beca22bc5b4bdcb72/bokeh-3.9.1.tar.gz", hash = "sha256:1463d3c84fba61a925ea6ace0b4d3d9c0160ca214f6851edbfed6dc27e172b60", size = 5749911, upload-time = "2026-06-04T18:04:42.932Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/47/0b/bdf449df87be3f07b23091ceafee8c3ef569cf6d2fb7edec6e3b12b3faa4/bokeh-3.9.0-py3-none-any.whl", hash = "sha256:b252bfb16a505f0e0c57d532d0df308ae1667235bafc622aa9441fe9e7c5ce4a", size = 6396068, upload-time = "2026-03-11T17:58:31.645Z" },
+    { url = "https://files.pythonhosted.org/packages/f3/54/40ff985187f0fd1afcedebc23eda0ba92bdbea1e0605cbb878b45391e5e0/bokeh-3.9.1-py3-none-any.whl", hash = "sha256:8bf2aae574509055fbd6b68f023046bebc91b0bbd631d204d0d60863b4237dbd", size = 6406728, upload-time = "2026-06-04T18:04:40.832Z" },
 ]
 
 [[package]]
@@ -648,14 +648,14 @@ wheels = [
 
 [[package]]
 name = "click"
-version = "8.4.1"
+version = "8.4.2"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "colorama", marker = "sys_platform == 'win32'" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/9b/98/518d8e5081007684232226f475082b30087d0f585e8457db087298259f49/click-8.4.1.tar.gz", hash = "sha256:918b5633eddf6b41c32d4f454bf0de810065c74e3f7dbf8ee5452f8be88d3e96", size = 353007, upload-time = "2026-05-22T04:08:37.769Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/76/d4/81420972a676e8ffea40450d8c8c92943e7218a78fe9b64359836cc9876b/click-8.4.2.tar.gz", hash = "sha256:9a6cea6e60b17ebe0a44c5cc636d94f09bd66142c1cd7d8b4cd731c4917a15f6", size = 338000, upload-time = "2026-06-24T17:45:15.148Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/c7/0d/67e5b4109ea4a837e80daa87c2c696711955e40449a97e8926672534def2/click-8.4.1-py3-none-any.whl", hash = "sha256:482be17c6991b8c19c5429a1e995d9b0efdbb63172824c41f99965dc0ade8ec2", size = 116639, upload-time = "2026-05-22T04:08:35.26Z" },
+    { url = "https://files.pythonhosted.org/packages/fb/e2/79c688af8b210d232694e31e59da9f6ec747bae31c3f5946e4e9b98860d5/click-8.4.2-py3-none-any.whl", hash = "sha256:e6f9f66136c816745b9d65817da91d61d957fb16e02e4dcd0552553c5a197b76", size = 119243, upload-time = "2026-06-24T17:45:13.73Z" },
 ]
 
 [[package]]
@@ -814,73 +814,73 @@ dev = [
 requires-dist = [
     { name = "aiohttp", extras = ["speedups"], specifier = ">=3.14.1" },
     { name = "aiohttp-cors", specifier = ">=0.8.1" },
-    { name = "altair", specifier = ">=5.5.0" },
-    { name = "anthropic", specifier = ">=0.52.0" },
+    { name = "altair", specifier = ">=6.2.2" },
+    { name = "anthropic", specifier = ">=0.116.0" },
     { name = "appose", specifier = ">=0.5.1" },
-    { name = "beautifulsoup4", specifier = ">=4.12.3" },
+    { name = "beautifulsoup4", specifier = ">=4.15.0" },
     { name = "biapy", specifier = ">=3.5.6" },
-    { name = "bokeh", specifier = ">=3.7.3" },
+    { name = "bokeh", specifier = ">=3.9.1" },
     { name = "cellpose", specifier = "==3.1.1.2" },
-    { name = "click", specifier = ">=8.1.8" },
+    { name = "click", specifier = ">=8.4.2" },
     { name = "csbdeep", specifier = ">=0.8.1" },
     { name = "ddgs", specifier = ">=9.10.0" },
-    { name = "faiss-cpu", specifier = ">=1.14.2" },
-    { name = "google-genai", specifier = ">=1.0.0" },
-    { name = "holoviews", specifier = ">=1.21.0" },
+    { name = "faiss-cpu", specifier = ">=1.14.3" },
+    { name = "google-genai", specifier = ">=2.11.0" },
+    { name = "holoviews", specifier = ">=1.23.1" },
     { name = "imageio", specifier = ">=2.37.0" },
-    { name = "ipykernel", specifier = ">=6.29.5" },
-    { name = "ipython", specifier = ">=8.31.0" },
+    { name = "ipykernel", specifier = ">=7.3.0" },
+    { name = "ipython", specifier = ">=9.15.0" },
     { name = "jsonref", specifier = ">=1.1.0" },
     { name = "jupyter-client", specifier = ">=8.6.3" },
     { name = "kaleido", specifier = ">=1.0.0" },
     { name = "langchain-community", specifier = ">=0.4.2" },
-    { name = "langchain-core", specifier = ">=1.4.0" },
+    { name = "langchain-core", specifier = ">=1.4.9" },
     { name = "langchain-huggingface", specifier = ">=1.2.2" },
     { name = "langchain-text-splitters", specifier = ">=1.1.2" },
     { name = "langfuse", specifier = ">=4.0.0" },
-    { name = "matplotlib", specifier = ">=3.10.3" },
+    { name = "matplotlib", specifier = ">=3.11.0" },
     { name = "napari-process-points-and-surfaces", specifier = ">=0.5.0" },
-    { name = "openai", specifier = ">=1.63.2" },
+    { name = "openai", specifier = ">=2.45.0" },
     { name = "opencv-contrib-python", specifier = ">=4.11.0.86" },
     { name = "opencv-python", specifier = ">=4.11.0.86" },
-    { name = "openinference-instrumentation-google-genai", specifier = ">=0.1.0" },
-    { name = "opentelemetry-instrumentation-anthropic", specifier = ">=0.40.0" },
+    { name = "openinference-instrumentation-google-genai", specifier = ">=1.2.0" },
+    { name = "opentelemetry-instrumentation-anthropic", specifier = ">=0.62.1" },
     { name = "plotly", specifier = ">=5.24.1" },
-    { name = "plotly-resampler", specifier = ">=0.10.0" },
+    { name = "plotly-resampler", specifier = ">=0.11.0" },
     { name = "pyclesperanto-prototype", specifier = ">=0.24.5" },
     { name = "pydantic", specifier = ">=2.10.6" },
-    { name = "pygal", specifier = ">=3.0.5" },
+    { name = "pygal", specifier = ">=3.1.3" },
     { name = "pyimagej", specifier = ">=1.5.0" },
-    { name = "pymupdf", specifier = ">=1.27.2.3" },
+    { name = "pymupdf", specifier = ">=1.28.0" },
     { name = "pystackreg", specifier = ">=0.2.8" },
     { name = "python-dotenv", specifier = ">=1.0.1" },
     { name = "pytorch-msssim", specifier = ">=1.0.0" },
     { name = "rich", specifier = ">=13.9.4" },
     { name = "scikit-image", specifier = ">=0.25.2" },
     { name = "seaborn", specifier = ">=0.13.2" },
-    { name = "selenium", specifier = ">=4.27.1" },
-    { name = "sentence-transformers", specifier = ">=5.5.1" },
+    { name = "selenium", specifier = ">=4.46.0" },
+    { name = "sentence-transformers", specifier = ">=5.6.0" },
     { name = "stardist", specifier = ">=0.9.1" },
     { name = "suite2p", specifier = ">=0.14.5" },
-    { name = "tavily-python", specifier = ">=0.7.10" },
-    { name = "tensorflow", specifier = ">=2.18.1" },
+    { name = "tavily-python", specifier = ">=0.7.26" },
+    { name = "tensorflow", specifier = ">=2.21.0" },
     { name = "textual-image", specifier = ">=0.7.0" },
     { name = "tifffile", specifier = ">=2025.1.10" },
-    { name = "timm", specifier = ">=1.0.14" },
-    { name = "torch", specifier = ">=2.7.1" },
+    { name = "timm", specifier = ">=1.0.28" },
+    { name = "torch", specifier = ">=2.13.0" },
     { name = "torchmetrics", specifier = ">=1.7.3" },
     { name = "trackpy", specifier = ">=0.6.4" },
     { name = "ujson", specifier = ">=5.13.0" },
-    { name = "unstructured", specifier = ">=0.21.5" },
+    { name = "unstructured", specifier = ">=0.24.1" },
     { name = "wikipedia", specifier = ">=1.4.0" },
     { name = "xarray", specifier = "==2024.11.0" },
 ]
 
 [package.metadata.requires-dev]
 dev = [
-    { name = "pytest", specifier = ">=8.3.4" },
+    { name = "pytest", specifier = ">=9.1.1" },
     { name = "pytest-cov", specifier = ">=6.0.0" },
-    { name = "ruff", specifier = ">=0.11.4" },
+    { name = "ruff", specifier = ">=0.15.21" },
 ]
 
 [[package]]
@@ -969,7 +969,7 @@ name = "cuda-bindings"
 version = "13.3.1"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
-    { name = "cuda-pathfinder" },
+    { name = "cuda-pathfinder", marker = "sys_platform != 'darwin'" },
 ]
 wheels = [
     { url = "https://files.pythonhosted.org/packages/ce/67/5e7dba1ba576dd73da5dee894ca076ca5e959450dfff66d6d510a255d1f7/cuda_bindings-13.3.1-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:c7855c4868aabc0cfae28abbe83d56734bdfbd08f08fc234ac1912a12858bf49", size = 6025351, upload-time = "2026-05-29T23:11:49.685Z" },
@@ -986,42 +986,51 @@ wheels = [
 
 [[package]]
 name = "cuda-toolkit"
-version = "13.0.2"
+version = "13.0.3.0"
 source = { registry = "https://pypi.org/simple" }
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