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Python for Clinical Study Reports and Submission

The book is available at https://pycsr.org/.

This project is a work in progress, enriched by the community's collective efforts. As you read this book, consider joining us as a contributor. The quality of this resource relies heavily on your input and expertise. We value your participation and contribution.

  • Authors: contributed the majority of content to at least one chapter.
  • Contributors: contributed at least one commit to the source code.
  • List of authors and contributors

Quick start

To explore code in this book, use the "Open in GitHub Codespaces" button below.

Build the book

Restore and activate the virtual environment using uv:

uv sync
source .venv/bin/activate

Render all formats:

quarto render

Render HTML only:

quarto render --to html

Render slides:

quarto render slides/rinpharma2025/index.qmd

Maintenance

Update Python version:

uv python pin x.y.z
uv sync

Update dependencies:

uv lock --upgrade
uv sync