Analyses are run on individual participant (sub-0X) surface (fsnative) or their projection on the HCP cifti format
- Load freesurfer and import subject in pycortex db freesurfer_import_pycortex.py
- High-pass, z-score, anat preproc_end.py
- Averaging across runs averaging_sbatch.py using averaging.py
Analyses are run on individual participant (sub-0X) surface (fsnative) or their projection on the HCP cifti format
- Compute inter-run correlation compute_run_corr_sbatch
- Make maps with pycortex pycortex_maps_run_corr.py or pycortex_maps_run_corr.sh
Analysis are run on the template of the HCP cifti format (170k) in which individual results are averaged.
- Compute inter-run correlation for template_avg compute_run_corr.py
- Make maps with pycortex for hcp1.6mm pycortex_maps_run_corr.py
Analyses are run on individual participant (sub-0X) surface (fsnative) or their projection on the HCP cifti format
- Create the visual matrix design vdm_builder_prf.py
- Run pRF gaussian fit prf_submit_gaussfit_jobs.py
- Compute pRF gaussian fit derivatives compute_gauss_derivatives.py
- Make pRF maps with pycortex pycortex_maps_gauss.py or pycortex_maps_gauss.sh
- Create 170k MMP rois masks create_rois-mmp_npz.py
- Draw individual ROI on fsnative data using Inkscape and create masks rois mask create_rois-drawn_npz.py
- Project MMP atals on fsnative surface using freesurfer freesurfer_project_mmp_fsnative.py
- Make fsnative roi mmp npz and overlays fsnative_mmp_rois.py
- Make ROIS files make_rois_img.py
- Create flatmaps of ROIs pycortex_maps_rois.py or pycortex_maps_rois.sh
- CSS fit within the ROIs prf_submit_css_jobs.py
- Compute CSS statistics css_stats_sbatch.py
- Compute CSS fit derivatives compute_css_derivatives.py
- Compute CSS population cortical magnification (CM) css_pcm_sbatch.py
- Make maps with pycortex pycortex_maps_css.py or pycortex_maps_css.sh
- Make general TSV with CSS pRF fit derivatives, statistics and CM make_tsv_css.py
- Make ROIs figure specific TSV with CSS pRF fit derivatives, statistics and CM make_rois_fig_tsv.py or make_rois_fig_tsv.sh
- Make ROIs figure of CSS pRF fit derivatives, statistics and CM make_rois_fig.py or make_rois_fig.sh
- Merge all figures merge_fig_prf.py
Analysis are run on the template of the HCP cifti format (170k) in which individual results are averaged and on an ROI-based group analysis determined individually on subject surfaces fsnative (group).
- Compute pRF gaussian grid fit derivatives for template_avg compute_gauss_derivatives.py
- Make pRF maps with pycortex for hcp1.6mm pycortex_maps_gauss.py
- Make ROIS files for template_avg make_rois_img.py
- Create flatmaps of ROIs for hcp1.6mm pycortex_maps_rois.py
- Compute CSS statistics for template_avg compute_css_stats.py
- Compute CSS fit derivatives for template_avg compute_css_derivatives.py
- Compute CSS population cortical magnification (CM) for template_avg compute_css_pcm.py
- Make maps with pycortex for hcp1.6mm pycortex_maps_css.py
- Make general TSV with CSS pRF fit derivatives, statistics and CM for hcp1.6mm make_tsv_css.py
- Make ROIs figure of CSS pRF fit derivatives, statistics and CM for hcp1.6mm and group make_rois_fig_tsv.py
- Make ROIs figure of CSS pRF fit derivatives, statistics and CM for hcp1.6mm and group make_rois_fig.py
- Merge all figures for hcp1.6mm and group merge_fig_prf.py
https://invibe.nohost.me/xxxxxx/
- Make subject WEBGL with pycortex pycortex_webgl_css.py
- Edit index.html and publish WEBGL on webapp publish_webgl.py
- Make pRF behaviour figure TSV make_prf_beh_fig_tsv.py
- Make pRF behaviour figure make_prf_beh_fig.py