create overview on where and how picks and exclude parameters are being used before deciding consistent approach #12697
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: 'Tests' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: ["main", "maint/*"] | |
| pull_request: | |
| branches: ["main", "maint/*"] | |
| # adapted from spyder-ide/spyder | |
| workflow_dispatch: | |
| inputs: | |
| ssh: | |
| description: 'Enable ssh debugging' | |
| required: false | |
| default: false | |
| type: boolean | |
| permissions: | |
| contents: read | |
| jobs: | |
| bandit: | |
| name: Bandit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: davidslusser/actions_python_bandit@v1.0.1 | |
| with: | |
| src: "mne" | |
| options: "-c pyproject.toml -ll -r" | |
| pip_install_command: "pip install bandit[toml]" | |
| pytest: | |
| name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.python }}' | |
| # macOS spawns children and runs slowtests, so it needs a bit more headroom | |
| timeout-minutes: ${{ startsWith(matrix.os, 'macos') && 40 || 30 }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| PYTHON_VERSION: '${{ matrix.python }}' # used by github_actions_env_vars.sh | |
| PYTHONUNBUFFERED: '1' | |
| MNE_CI_KIND: '${{ matrix.kind }}' | |
| CI_OS_NAME: '${{ matrix.os }}' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: '3.13' | |
| kind: pip | |
| - os: ubuntu-latest | |
| python: '3.14' | |
| kind: pip-pre | |
| - os: ubuntu-latest | |
| python: '3.13' | |
| kind: conda | |
| - os: macos-latest # arm64 | |
| python: '3.14' | |
| kind: pip | |
| - os: macos-15-intel # Intel | |
| python: '3.13' | |
| kind: pip | |
| - os: ubuntu-latest | |
| python: '3.12' | |
| kind: minimal | |
| - os: ubuntu-22.04 | |
| python: '3.11' | |
| kind: old | |
| - os: ubuntu-latest | |
| python: '3.14t' # free-threaded | |
| kind: pip-ft | |
| steps: | |
| - uses: actions/checkout@v7.0.1 | |
| with: | |
| fetch-depth: 0 | |
| persist-credentials: false | |
| - name: Get commit message | |
| run: echo "COMMIT_MESSAGE=$(git show -s --format=%s ${{ github.event.pull_request.head.sha || github.sha }})" | tee -a ${GITHUB_ENV} | |
| - name: Triage SSH | |
| run: | | |
| if [[ "${{ inputs.ssh }}" == "true" ]] || [[ "$COMMIT_MESSAGE" == *"[actions ssh]"* ]]; then | |
| echo "ENABLE_SSH=true" | tee -a $GITHUB_ENV | |
| else | |
| echo "ENABLE_SSH=false" | tee -a $GITHUB_ENV | |
| fi | |
| - name: Setup Remote SSH Connection | |
| if: env.ENABLE_SSH == 'true' | |
| uses: Warpbuilds/action-debugger@v1.3 | |
| timeout-minutes: 80 | |
| with: | |
| detached: true | |
| - run: ./tools/github_actions_env_vars.sh | |
| # Xvfb/OpenGL | |
| - uses: pyvista/setup-headless-display-action@v4 | |
| with: | |
| qt: true | |
| pyvista: false | |
| wm: false | |
| # Python (if pip) | |
| - uses: actions/setup-python@v7.0.0 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| if: startswith(matrix.kind, 'pip') || matrix.kind == 'minimal' | |
| id: setup-python | |
| # Workaround macOS path behavior with login shells (which puts system Python first). | |
| # \$PATH must stay escaped so that it is expanded when each login shell sources | |
| # ~/.bash_profile: writing the expanded value would freeze PATH as of this step and | |
| # silently discard anything a later step adds to $GITHUB_PATH. | |
| - run: echo "export PATH=\"$(dirname ${{ steps.setup-python.outputs.python-path }}):\$PATH\"" | tee -a ~/.bash_profile # zizmor: ignore[template-injection] | |
| if: startswith(matrix.kind, 'pip') && startswith(matrix.os, 'macos') | |
| # Python (if conda) | |
| - uses: mamba-org/setup-micromamba@v3 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV }} | |
| environment-name: mne | |
| log-level: 'info' | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| -v | |
| if: matrix.kind == 'conda' | |
| timeout-minutes: 20 | |
| # Python (if old) | |
| - uses: astral-sh/setup-uv@v10.0.1 | |
| with: | |
| version: ">=0.9" | |
| activate-environment: true | |
| cache-dependency-glob: | | |
| **/pylock.ci-old.toml | |
| python-version: ${{ matrix.python }} | |
| if: matrix.kind == 'old' | |
| - run: bash ./tools/github_actions_verify_python.sh "${{ matrix.python }}" | |
| - run: bash ./tools/github_actions_dependencies.sh | |
| timeout-minutes: 10 | |
| - name: Check 'old' CI environment | |
| uses: mne-tools/mne-tools/actions/check-environment@main | |
| with: | |
| project-root: ${{ github.workspace }} | |
| groups: lockfile_extras | |
| if: matrix.kind == 'old' | |
| # MNE-C minimal commands. The action caches the download and no-ops on | |
| # platforms that have no binaries (macOS arm64, Windows, Linux arm64), so it | |
| # only needs to be gated on the kinds that deliberately do without them. | |
| - name: Setup minimal commands | |
| uses: mne-tools/mne-tools/actions/setup-minimal-commands@main | |
| if: matrix.kind != 'minimal' && matrix.kind != 'old' && matrix.kind != 'pip-ft' | |
| - run: bash ./tools/github_actions_infos.sh | |
| - name: Check Qt import | |
| uses: mne-tools/mne-tools/actions/check-qt-import@main | |
| with: | |
| qt-backend: ${{ env.MNE_QT_BACKEND }} | |
| if: env.MNE_QT_BACKEND != '' | |
| - name: Run tests with no testing data | |
| run: MNE_SKIP_TESTING_DATASET_TESTS=true pytest -m "not (ultraslowtest or pgtest)" -n "$PYTEST_XDIST_N" --dist loadscope --timeout=120 --timeout-method=thread -o faulthandler_timeout=110 $COV_ARGS --tb=short -vv -rfE mne/ | |
| if: matrix.kind == 'minimal' | |
| - run: ./tools/get_testing_version.sh | |
| - uses: actions/cache@v6.1.0 | |
| with: | |
| key: mne_data-testing-${{ env.TESTING_VERSION }}-misc-${{ env.MISC_VERSION }} | |
| path: ~/mne_data | |
| - run: bash ./tools/github_actions_download.sh | |
| - run: bash ./tools/github_actions_test.sh # for some reason on macOS we need to run "bash X" in order for a failed test run to show up | |
| - uses: codecov/codecov-action@v7.0.0 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # COV_ARGS is empty on jobs where we don't measure coverage (Python < 3.14) | |
| if: (success() || failure()) && env.COV_ARGS != '' |