Add optional edfio parsing engine to read_raw_edf #9040
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: autofix.ci | |
| on: # yamllint disable-line rule:truthy | |
| pull_request: | |
| types: [opened, synchronize, labeled, unlabeled] | |
| permissions: | |
| contents: read | |
| jobs: | |
| autofix-changelog-headers: | |
| name: Autofix and style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v7.0.1 | |
| with: | |
| persist-credentials: false | |
| - uses: actions/setup-python@v7.0.0 | |
| - run: pip install --upgrade towncrier pygithub gitpython numpy vulture | |
| - run: python ./.github/actions/rename_towncrier/rename_towncrier.py | |
| - run: python ./tools/dev/ensure_headers.py | |
| - run: vulture | |
| # Run this last, since it can fail the job if moved up | |
| - uses: j178/prek-action@v3.0.0 | |
| - uses: autofix-ci/action@c5b2d67aa2274e7b5a18224e8171550871fc7e4a | |
| if: success() || failure() | |
| changed-files: | |
| name: Check for dependency-relevant changes | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: read | |
| outputs: | |
| dependencies: ${{ steps.check.outputs.dependencies }} | |
| steps: | |
| - name: Check whether any dependency input or generated file changed | |
| id: check | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| PR_NUMBER: ${{ github.event.pull_request.number }} | |
| REPO: ${{ github.repository }} | |
| run: | | |
| set -eo pipefail | |
| # Also match the generated files themselves, so hand-edits get reverted | |
| PATTERN='^(pyproject\.toml|README\.rst|environment\.yml|tools/pylock\.ci-old\.toml|\.github/workflows/autofix\.yml)$' | |
| # Collect first: `grep -q` exits early, and the resulting SIGPIPE would | |
| # trip `pipefail` precisely when a file does match | |
| FILES=$(gh api --paginate "repos/${REPO}/pulls/${PR_NUMBER}/files" --jq '.[].filename') | |
| if grep -qE "$PATTERN" <<< "$FILES"; then | |
| echo "dependencies=true" | tee -a "$GITHUB_OUTPUT" | |
| else | |
| echo "dependencies=false" | tee -a "$GITHUB_OUTPUT" | |
| fi | |
| autofix-dependencies: | |
| name: Autoupdate 'old' CI lockfile, README dependencies, and environment file | |
| runs-on: ubuntu-latest | |
| needs: changed-files | |
| if: needs.changed-files.outputs.dependencies == 'true' | |
| steps: | |
| - uses: actions/checkout@v7.0.1 | |
| with: | |
| persist-credentials: false | |
| - uses: astral-sh/setup-uv@v10.0.1 | |
| with: | |
| version: ">=0.9" | |
| activate-environment: true | |
| enable-cache: false | |
| python-version: "3.12" | |
| - name: Update 'old' CI lockfile | |
| # uv pip compile requires setting the python version for the environment explicitly in the command :( | |
| run: | | |
| uv pip compile pyproject.toml \ | |
| --python "3.11" --python-platform "x86_64-unknown-linux-gnu" \ | |
| --group test --group lockfile_extras \ | |
| --resolution lowest-direct \ | |
| --format pylock.toml --output-file tools/pylock.ci-old.toml \ | |
| --no-cache | |
| - name: Validate 'old' CI lockfile | |
| uses: mne-tools/mne-tools/actions/check-lockfile@main | |
| with: | |
| project-root: ${{ github.workspace }} | |
| lockfile-path: tools/pylock.ci-old.toml | |
| groups: lockfile_extras | |
| - name: Sync dependencies to README | |
| uses: mne-tools/mne-tools/actions/sync-dependencies-to-readme@main | |
| with: | |
| project-root: ${{ github.workspace }} | |
| ignore-upper-pins: numpy | |
| - name: Sync dependencies to environment file | |
| uses: mne-tools/mne-tools/actions/sync-dependencies-to-environment-file@main | |
| with: | |
| project-root: ${{ github.workspace }} | |
| extras: full,full-no-qt,hdf5 | |
| # manually specify extras groups to sync, as logic for recursion into other groups isn't implemented in the action yet (see mne-tools#40) | |
| # e.g., `full` includes `mne[full-no-qt]`, but the action won't recognise this, so we need to specify `full-no-qt` explicitly | |
| # ffmpeg is pinned to work around a conda solver issue (gh-14023) | |
| additional-dependencies: pip,mamba,conda,nomkl,noqt5,ffmpeg==8.1.2 | |
| pip-dependencies: pymef | |
| requirements-overrides: PySide6==6.11.1,vtk==9.6.2 | |
| - uses: autofix-ci/action@c5b2d67aa2274e7b5a18224e8171550871fc7e4a | |
| if: success() || failure() |