Summary
The penalty (sparsity) parameter in OasisConfig (config.py, lines 16-40) is passed to oasisAR2() as lam in neural.py (lines 61-128). This parameter may have slightly different semantics between the browser-based KTune tool (used to tune parameters) and the Python oasis package.
Action
- Run identical deconvolution parameters through the Python
oasis package directly and compare outputs to KTune results
- Document the exact parameter mapping between KTune and
oasisAR2(g1, g2, lam, s_min)
- If there is a discrepancy, adjust the config or add a conversion step
Summary
The
penalty(sparsity) parameter inOasisConfig(config.py, lines 16-40) is passed tooasisAR2()aslaminneural.py(lines 61-128). This parameter may have slightly different semantics between the browser-based KTune tool (used to tune parameters) and the Pythonoasispackage.Action
oasispackage directly and compare outputs to KTune resultsoasisAR2(g1, g2, lam, s_min)