DESCRIPTION

Package: combiroc
Title: Selection and Ranking of Omics Biomarkers Combinations Made Easy
Date: 2021-08-13
Version: 0.2.3
Language: en-US
Authors@R: 
  c(person(given = "Ivan",
           family = "Ferrari",
           role = "aut",
           email = "ferrari@ingm.org",
           comment = c(ORCID = "0000-0003-3746-4143")),
    person(given = "Riccardo L.",
           family = "Rossi",
           role = c("aut", "cre"),
           email = "ric.rossi@gmail.com",
           comment = c(ORCID = "0000-0002-4964-3264")),
    person(given = "Saveria",
           family = "Mazzara",
           role = "aut",
           email = "saveria.mazzara@gmail.com",
           comment = c(ORCID = "0000-0003-1799-2360")),
    person(given = "Mauro",
           family = "Bombaci",
           role = c("ccp", "ctb", "dtc"),
           email = "bombaci@ingm.org",
           comment = c(ORCID = "0000-0002-9887-4165")))
Description: Provides functions and a workflow to easily and powerfully calculating specificity, sensitivity and ROC curves of biomarkers combinations. Allows to rank and select multi-markers signatures as well as to find the best performing sub-signatures. The method used was first published as a Shiny app and described in Mazzara et al. (2017) <doi:10.1038/srep45477> and further described in Bombaci & Rossi (2019) <doi:10.1007/978-1-4939-9164-8_16>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports:
    tidyr,
    dplyr,
    ggplot2,
    gtools,
    pROC,
    stringr,
    stats,
    utils,
    moments,
    devtools
Suggests: 
    testthat (>= 3.0.0),
    knitr,
    markdown,
    rmarkdown,
    covr
VignetteBuilder: knitr
Depends: 
    R (>= 2.10)
URL: https://github.com/ingmbioinfo/combiroc
BugReports: https://github.com/ingmbioinfo/combiroc/issues
Config/testthat/edition: 3