From 6d46353da418e6b199a4ab8747ac9a4043d597dc Mon Sep 17 00:00:00 2001
From: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: Tue, 4 Aug 2026 22:29:03 +0300
Subject: [PATCH] Update Dockerfile

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 9e9a30860..4fdb69db3 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -3,7 +3,7 @@ FROM bioconductor/bioconductor_docker:${BIOC_VERSION}
 COPY . /opt/pkg
 
 # Install book package 
-RUN Rscript -e 'repos <- BiocManager::repositories() ; remotes::install_local(path = "/opt/pkg/", repos=repos, dependencies=TRUE, build_vignettes=FALSE, upgrade=TRUE) ; sessioninfo::session_info(installed.packages()[,"Package"], include_base = TRUE)'
+RUN Rscript -e 'repos <- BiocManager::repositories(); options(repos = repos); devtools::install("/opt/pkg", dependencies = TRUE, build_vignettes = FALSE); sessioninfo::session_info(installed.packages()[,"Package"], include_base = TRUE)'
 
 ## Build/install using same approach than BBS
 RUN R CMD INSTALL /opt/pkg