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147 lines (130 loc) · 5.97 KB
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%% Before starting, load everything
clear all
close all
files=Data_Listing();
load('1CA1','-mat');
load('1EC1','-mat');
load('1EC2','-mat');
rat=1;
area={CA1,EC1,EC2};
lfp={Days(CA1),Days(EC1),Days(EC2)};
name=['1CA1';'1EC1';'1EC2'];
n_fs=400;
protocol={'A','B','C'};
[n m]=size(area);
a=2;
clear matrix
prot=3;
count=1;
n_fs=400;
[n m]=size(area);
totaltime=[20,20,42];
non_mov_time=6;
totaltime=20;
jump_time=5*n_fs;
%% rat 14566
fast_time=5;
slow_time=15;
for i=1:length(lfp{a})
session_number=RecordingSession(files,rat,area{a},lfp{a}(i,:),protocol{prot});
if length(session_number)
for se=1:length(session_number)
order=Wished_Register_Order(area{a},lfp{a}(i,:));
register=Rat_Register(files,area{a},rat,order);
[eeg,fs]=ReadEEG(register,session_number(se));
[qual4,qual,qual2]=egf_theta_quality_2016(eeg);
if qual>0.5
n_fs=floor(fs/floor(fs/n_fs));
eeg=resample(eeg,1,floor(fs/n_fs));
pos=Loading_Pos(register,session_number(se));
tf = isfield(pos.data, 'log');
if ~(prot=='C') tf=1; end
if tf==1
[sr sl]=ReadStartTime(pos);
[sr sl]=ReadStartTime(pos);
s1=sr-non_mov_time;
s2=sl-non_mov_time;
[srr err srl erl]=RestingTime(pos,totaltime,non_mov_time);
s1=floor(s1*n_fs)+1;
s2=floor(s2*n_fs)+1;
er=floor((sr+totaltime)*n_fs);
el=floor((sl+totaltime)*n_fs);
srr=floor(srr*n_fs)+1;
err=floor(err*n_fs);
srl=floor(srl*n_fs)+1;
erl=floor(erl*n_fs);
sr=floor(sr*n_fs);
sl=floor(sl*n_fs);
Y1=[];Y2=[];Y3=[];Y4=[];Y5=[];Y6=[];Y7=[];Y8=[];Y9=[];Y10=[];Y11=[];Y12=[];
for trial=1:length(s1)-1
Y1=[Y1,eeg(srr(trial):err(trial))'];% resting period
Y2=[Y2,eeg(srl(trial):erl(trial))'];
Y3=[Y3,eeg(s1(trial):sr(trial))'];%expecting period
Y4=[Y4,eeg(s2(trial):sl(trial))'];
Y5=[Y5,eeg(sr(trial):sr(trial)+jump_time)'];%running1
Y6=[Y6,eeg(sr(trial)+jump_time:sr(trial)+2*jump_time)'];
Y7=[Y7,eeg(sr(trial)+2*jump_time:sr(trial)+3*jump_time)'];
Y8=[Y8,eeg(sr(trial)+3*jump_time:sr(trial)+4*jump_time)'];
Y9=[Y9,eeg(sl(trial):sl(trial)+jump_time)'];%running1
Y10=[Y10,eeg(sl(trial)+jump_time:sl(trial)+2*jump_time)'];
Y11=[Y11,eeg(sl(trial)+2*jump_time:sl(trial)+3*jump_time)'];
Y12=[Y12,eeg(sl(trial)+3*jump_time:sl(trial)+4*jump_time)'];
end
x1=[Y1,Y2];
x2=[Y3,Y4];
x3=[Y5,Y9];
x4=[Y6,Y10];
x5=[Y7,Y11];
x6=[Y8,Y12];
figure(i)
subplot(2,3,1)
[meanp1 peakp1]=COMODOphase(x1,n_fs,9,3,18,'REsting');
COMODOphase(x1,n_fs,10,3,18,'Resting');
subplot(2,3,2)
[meanp2 peakp2]=COMODOphase(x2,n_fs,9,3,18,'Waiting');
COMODOphase(x2,n_fs,10,3,18,'Waiting');
subplot(2,3,3)
[meanp3 peakp3]=COMODOphase(x3,n_fs,9,3,18,'v1');
COMODOphase(x3,n_fs,10,3,18,'v1');
subplot(2,3,4)
[meanp4 peakp4]=COMODOphase(x4,n_fs,9,3,18,'v2');
COMODOphase(x4,n_fs,10,3,18,'v2');
subplot(2,3,5)
[meanp5 peakp5]=COMODOphase(x5,n_fs,9,3,18,'v3');
COMODOphase(x5,n_fs,10,3,18,'v3');
subplot(2,3,6)
[meanp6 peakp6]=COMODOphase(x6,n_fs,9,3,18,'v4');
COMODOphase(x6,n_fs,10,3,18,'v4');
saveas(i,strcat('C:\Users\meli__000\Desktop\Melisa\Doctorado\BandsCoupling\Modulation\Speeds2\',name(a,:),'_',lfp{a}(i,:)),'png')
close(i)
vector1=[meanp1 meanp2 meanp3 meanp4 meanp5 meanp6];
vector2=[peakp1 peakp2 peakp3 peakp4 peakp5 peakp6];
matrix1(count,:)=vector1;
matrix2(count,:)=vector2;
count=count+1;
end
end
end
end
end
clear i
figure(a)
vect1=mean((exp(i*matrix1)));
var_phase1=1-abs(vect1);
mean_phase1=atan2(imag(vect1),real(vect1));
subplot(2,1,1)
h=errorbar([1:6],mean_phase1,var_phase1,'k');
set(h,'Linewidth',2)
xlabel('States: Resting - Waiting - v1 -v2 - v3- v4')
ylabel('Mean Mean Phase')
vect2=mean((exp(i*matrix2)));
var_phase2=1-abs(vect2);
mean_phase2=atan2(imag(vect2),real(vect2));
subplot(2,1,2)
h=errorbar([1:6],mean_phase2,var_phase2,'b');
set(h,'Linewidth',2)
xlabel('States: Resting - Waiting - v1 - v2- v3- v4')
ylabel('Mean Peak Phase')
nombre=strcat('C:\Users\meli__000\Desktop\Melisa\Doctorado\BandsCoupling\Modulation\Speeds2\',int2str(prot),'_',name(a,:),'_COMODO_mean_states');
save(nombre,'matrix1','matrix2','-mat')
saveas(a,nombre,'png')