Deep annotate article with Wikidata tags

[lubianat]

Do something similar as in the article Adventures in semantic publishing: exemplar semantic enhancements of a research article (2009) where they semantically enhanced this article.

Ideas:

• Semantically enhance the same paper above
• Save annotations in BioC format
• Save annotations in EuropePMC format

Challenges:

• Find a practical way of annotating. Maybe some commercial systems? Maybe using RDFa HTML tags (as the original project)

It would be a manual pilot for ANN, so we can study a bit the challenges of the annotation per se.

[lubianat]

An option is just to manually add RDFa tags for the HTML page of a smaller CC-BY article.

We can create a GitHub repository that compiles the HTML into a GH pages automatically and anyone can contribute at any time.

Perhaps a smaller article would be more suitable for this pilot.

[lubianat]

One pilot can be to annotate the abstract of my PhD scholarship grant: https://bv.fapesp.br/en/bolsas/193825/building-a-biological-knowledge-graph-via-wikidata-with-a-focus-on-the-human-cell-atlas/

There is a version in Portuguese and one in English, it could be fun to have a bilingual enhancement.

[lubianat]

I have started to prototype it using the BioQRator tool at: http://www.bioqrator.org/collections/657/documents/18431445