System:centos7
Install:
I directly pulled PhageBoost-master from GitHub
Then use the following installation method:
conda create -y -n PhageBoost-env python=3.11
conda activate PhageBoost-env
cd ~/PhageBoost-master/PhageBoost/
python setup.py bdist_wheel
pip install --user .
PhageBoost -h
① Err1: Module NotFoundError: No module named 'CodonUsage' issue
I used the method( #33 ) to solve this problem.
but got a new error
② error2:FileNotFoundError:No such file or directory:models/phageboost_mode_v_1.01.pkl.z
Traceback (most recent call last):
File "/local/bin/PhageBoost", line 8, in
sys.exit(main())
^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/main.py", line 223, in main
model, feats, feats_ = read_model_from_file(model_file)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/main.py", line 63, in read_model_from_file
model = get_predictions.load_model(model_file, n_jobs=1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/get_predictions.py", line 113, in load_model
model = joblib.load(model_file)
^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/joblib/numpy_pickle.py", line 735, in load
with open(filename, "rb") as f:
^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '~/.local/lib/python3.11/site-packages/PhageBoost/models/phageboost_mode_v_1.01.pkl.z'
I tried to check the "/. local/lib/python3.11/site packages/ShageBoost/models files".
Indeed one model is missing.
I used cp to copy "/PhageBoost-master/PhageBoost/models/phageboost_mode-v_1.01. pkl. z" to "/. local/lib/python3.11/site packages/PhageBoost/models" .
This can solve the problem, although I haven't checked where the source code is causing it
System:centos7
Install:
I directly pulled PhageBoost-master from GitHub
Then use the following installation method:
conda create -y -n PhageBoost-env python=3.11
conda activate PhageBoost-env
cd ~/PhageBoost-master/PhageBoost/
python setup.py bdist_wheel
pip install --user .
PhageBoost -h
① Err1: Module NotFoundError: No module named 'CodonUsage' issue
I used the method( #33 ) to solve this problem.
but got a new error
② error2:FileNotFoundError:No such file or directory:models/phageboost_mode_v_1.01.pkl.z
Traceback (most recent call last):
File "/local/bin/PhageBoost", line 8, in
sys.exit(main())
^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/main.py", line 223, in main
model, feats, feats_ = read_model_from_file(model_file)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/main.py", line 63, in read_model_from_file
model = get_predictions.load_model(model_file, n_jobs=1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/PhageBoost/get_predictions.py", line 113, in load_model
model = joblib.load(model_file)
^^^^^^^^^^^^^^^^^^^^^^^
File "/.local/lib/python3.11/site-packages/joblib/numpy_pickle.py", line 735, in load
with open(filename, "rb") as f:
^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '~/.local/lib/python3.11/site-packages/PhageBoost/models/phageboost_mode_v_1.01.pkl.z'
I tried to check the "/. local/lib/python3.11/site packages/ShageBoost/models files".
Indeed one model is missing.
I used cp to copy "/PhageBoost-master/PhageBoost/models/phageboost_mode-v_1.01. pkl. z" to "/. local/lib/python3.11/site packages/PhageBoost/models" .
This can solve the problem, although I haven't checked where the source code is causing it