Groups of fasta input files

[tcd11221]

Hello, there are a few things I don't quite understand about this software, and I'd appreciate some answers!
Now I used the example files in the package for training, and step5 started using my own data for analysis, but how did I get the fasta files for pop1 and pop2? Are they separated by chromosome after converting to pseudogenome using vcf?
Thank you very much for your help.

[andrewkern]

hi there-- fasta files should be supplied one chromosome at a time. example fasta input can be found here: https://github.com/kr-colab/FILET/tree/master/dataToClassify

as for how to create fasta files-- yes I imagine you could create pseudochromosomes from a vcf

[tcd11221]

Thank you for your help, I solved the problem, good luck with your life!