for-MSc-projects.md

Clinical NLP

From Hang Dong

• A recent review on clinical ontology concept extraction: https://doi.org/10.1186/s13326-020-00231-z

• Some tutorial for BERT and Transformers

  • http://jalammar.github.io/a-visual-guide-to-using-bert-for-the-first-time/
  • http://jalammar.github.io/illustrated-bert/

• A technical paper, the Transformer model, https://arxiv.org/pdf/1706.03762.pdf

• Try some coding and NLP experiments:

  • https://huggingface.co/transformers/custom_datasets.html#seq-imdb or any other tutorial you can find on the web

• a good source of NLP papers is in:

  • https://www.aclweb.org/anthology/

• Some recent clinical NLP papers in BioNLP-2020:

  • https://www.aclweb.org/anthology/volumes/2020.bionlp-1/