README.md

install instructions

install docker

https://docs.docker.com/desktop/install/mac-install/

clone repo

git clone https://github.com/jpfon/csv-mr.git

build image

docker build . -t csv-mr

merge files

• cd into parent directory of files to merge
• docker run --rm -v $PWD:/app/ csv-mr python main.py
• by default it will look for files in ./inputs, merge on protocol title and output output.csv
• if those need to be changed, then:
  • docker run --rm -v $PWD:/app/ csv-mr python main.py --merge-on [COLUMN_NAME] --inputs_folder [INPUTS_FOLDER] --output [OUTPUT.CSV]