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slurmR 0.4-3 (CRAN)

Minor release.

New features

  • Added a preamble option for Slurm batch scripts. This allows the user to specify commands that need to be added to script, e.g., module load.

  • preamble can be specified via opts_slurmR$set_preamble() or directly when calling Slurm_*apply.

  • Added the function opts_slurmR$reset().

Bug fixes

  • sourceSlurm() was using a file created at tempdir() which was deleted, and thus, unavailable to be used by sbatch. Tempfiles like those are now created at dirname(tempdir()).

slurmR 0.4-2

Minor release.

Bug fixes

  • Fixes an user-message issue (not crucial) observed in Fedora and Solaris.

slurmR 0.4-1 (CRAN)

Bug fixes

  • Fixed bug when collecting failed jobs. slurmR would fail to correctly list failed jobs and thus to collect outputs. This would also would affect when trying to collect partially resubmitted jobs.

  • Slurm options passed via opts_slurmR are now passed to Slurm_*apply as documented. Thanks to Gregory Penn (gregorypenn) who reported the bug.

  • slurmr_cmd now expands the cmd_path.

Misc

  • Increased code coverage.

  • The function wait_slurm() is now exported and documented.

  • Each line in the written R script is now wrapped with a custom tryCatch function (tcq). On error, this new function will collect both the expression called, the error message, and will quit the R session, so now the user has a better description of possible errors, e.g. missing packages.

slurmR 0.3-0

  • Name changed from sluRm to slurmR.

slurmR 0.2-0

  • JOSS review (finalizing).

slurmR 0.1-0

  • Added a NEWS.md file to track changes to the package.