Documentation

[mbensouda]

HI Kunal ! thank you very much for your tool, can you elaborate on the inputs/outputs that the user is supposed to take for the following cell:

ct_obj = ct.tl.read_celltag(data_path_2, starcode_path="../starcode/",
                   allowlist_path="../18N-multi-v1-allowlist.csv", inplace=True)

How the peak matrix / gene matrix are used here.
Thank you for the answer!

[jindalk]

Hi Meriem, the read_celltag extracts and processes celltag containing reads from the single cell bam files, peak/gene matrices are not used in this process.