MONSDA/environment.yml at main · jfallmann/MONSDA · GitHub

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name: monsda-test
channels:
  - conda-forge
  - bioconda
  - nodefaults
dependencies:
  - biopython=1.86
  - fastapi=0.128.5
  - grep >=3.4
  - isort=7.0.0
  - natsort=8.4.0
  - nextflow=25.10.3
  - numpy=2.4.2
  - pandas=2.3.3
  - perl=5.32.1
  - pip>=25.3
  - python=3.12.2
  - pyyaml=6.0.3
  - scipy=1.17.0
  - snakemake=9.16.3
  - snakemake-executor-plugin-slurm=2.1.0
  - snakemake-executor-plugin-cluster-generic=1.0.9
  - snakemake-interface-common=1.22.0
  - snakemake-interface-executor-plugins=9.3.9
  - snakemake-interface-report-plugins=1.3.0
  - snakemake-interface-storage-plugins=4.3.2
  - snakemake-storage-plugin-s3=0.3.6
  - snakemake-storage-plugin-ftp=0.1.3
  - snakemake-storage-plugin-http=0.3.0
  - snakemake-storage-plugin-zenodo=0.1.5
  - uvicorn=0.40.0