From e2e92aa2885fdb82e25b6347ffc5d49e491da47f Mon Sep 17 00:00:00 2001 From: Eugenia Date: Wed, 24 Sep 2025 15:37:21 +0200 Subject: [PATCH 1/4] Update utils.py Utils.py has been updated to fix a missing assignment of similarity_matrix --- src/cia/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/cia/utils.py b/src/cia/utils.py index e72b94b..2d6300e 100755 --- a/src/cia/utils.py +++ b/src/cia/utils.py @@ -90,7 +90,7 @@ def signatures_similarity(signatures_dict, show='J'): similarity = intersec / union elif show == '%': similarity = round(100 * intersec / len(signatures_dict[signature_names[i]]), 2) - + similarity_matrix[i, j] = similarity_matrix[j, i] = similarity similarity = pd.DataFrame(similarity_matrix, index=signature_names, columns=signature_names) return similarity From 7536628644adbb7b70c2c66a743b21475351d112 Mon Sep 17 00:00:00 2001 From: Eugenia Date: Wed, 24 Sep 2025 15:44:35 +0200 Subject: [PATCH 2/4] Update CHANGELOG.rst Updated version --- CHANGELOG.rst | 3 +++ 1 file changed, 3 insertions(+) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 9a2a6ca..c4cf844 100755 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,6 +1,9 @@ ========= Changelog ========= +Version 1.0.0a6 +=============== +- fixed missing similarity matrix assignment in utils.py Version 1.0.0a5 =============== From ada7c1fcc7f5120e11d4db7f0a5080167159a7dc Mon Sep 17 00:00:00 2001 From: Eugenia Date: Wed, 24 Sep 2025 15:45:41 +0200 Subject: [PATCH 3/4] Update setup.py Updated version to 1.0..a6 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 73bd027..789fa33 100755 --- a/setup.py +++ b/setup.py @@ -13,7 +13,7 @@ #setup(use_scm_version={"version_scheme": "no-guess-dev"}) #setup(use_scm_version=True, setup_requires=['setuptools_scm'])#{"version_scheme": "post-release", "local_scheme": "node-and-timestamp"}) setup(name='cia_python', - version='1.0.a5', # manually set the version here + version='1.0.a6', # manually set the version here packages=find_packages(), install_requires=['seaborn', 'numpy', 'pandas', 'AnnData','scanpy', 'igraph', 'leidenalg'] ) From 1f77ed60f880c27cb98852d8becafab7c47ec1f0 Mon Sep 17 00:00:00 2001 From: Eugenia Date: Wed, 24 Sep 2025 15:47:09 +0200 Subject: [PATCH 4/4] Update setup.cfg Updated version to 1.0.0a6 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 3f38529..3e06b8d 100755 --- a/setup.cfg +++ b/setup.cfg @@ -33,7 +33,7 @@ classifiers = Programming Language :: Python #set version manually -version = 1.0.0a5 +version = 1.0.0a6 [options] zip_safe = False