diff --git a/DESCRIPTION b/DESCRIPTION index 447fabf..0456014 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: CIA Title: Cluster Independent Annotation (CIA) to Accurately Classify Cells in scRNA-seq Datasets Using Gene Signatures -Version: 0.3.0 +Version: 0.3.1 Authors@R: c( person( @@ -33,7 +33,7 @@ Description: CIA (Cluster Independent Annotation) is designed to accurately License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.2 +RoxygenNote: 7.3.3 Imports: SingleCellExperiment, SummarizedExperiment, diff --git a/R/CIA_core.R b/R/CIA_core.R index 2ced7a0..2719722 100644 --- a/R/CIA_core.R +++ b/R/CIA_core.R @@ -26,7 +26,7 @@ #' signatures #' #' gmt_url <- -#' "https://data.wikipathways.org/20240710/gmt/wikipathways-20240710-gmt-Homo_sapiens.gmt" +#' "https://data.wikipathways.org/20251110/gmt/wikipathways-20251110-gmt-Homo_sapiens.gmt" #' #' sig_wikipathways <- load_signatures(gmt_url) #' head(names(sig_wikipathways)) diff --git a/R/CIA_metrics.R b/R/CIA_metrics.R index 4d09529..cffb992 100644 --- a/R/CIA_metrics.R +++ b/R/CIA_metrics.R @@ -584,8 +584,8 @@ grouped_distributions <- function(data, theme_minimal() + labs( title = "Median score values", - x = "Signatures", - y = ref_obs + x = ref_obs, + y = "Signatures" ) ## Save or display plot diff --git a/man/load_signatures.Rd b/man/load_signatures.Rd index f742f64..4dc0269 100644 --- a/man/load_signatures.Rd +++ b/man/load_signatures.Rd @@ -31,7 +31,7 @@ signatures <- load_signatures(gmt_file) signatures gmt_url <- - "https://data.wikipathways.org/20240710/gmt/wikipathways-20240710-gmt-Homo_sapiens.gmt" + "https://data.wikipathways.org/20251110/gmt/wikipathways-20251110-gmt-Homo_sapiens.gmt" sig_wikipathways <- load_signatures(gmt_url) head(names(sig_wikipathways))