diff --git a/docs/assets/logo-icon.svg b/docs/assets/logo-icon.svg deleted file mode 100644 index 51c6ad7..0000000 --- a/docs/assets/logo-icon.svg +++ /dev/null @@ -1,32 +0,0 @@ - - patchworks icon - A patchwork of image tiles with cells crossing the seams as single unified labels. - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/docs/assets/logo.svg b/docs/assets/logo.svg deleted file mode 100644 index 75642ab..0000000 --- a/docs/assets/logo.svg +++ /dev/null @@ -1,39 +0,0 @@ - - patchworks - A patchwork of image tiles with cells crossing the seams as single unified labels. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - patchworks - tiled segmentation, stitched whole - diff --git a/pyproject.toml b/pyproject.toml index 5887a11..36e6da6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,7 +57,9 @@ bioio = [ # imaris reads .ims files natively (HDF5, no JVM) for OME-ZARR conversion. imaris = ["imaris-ims-file-reader"] # napari enables the interactive viewer plugin. -napari = ["napari[all]"] +# lxml-html-clean: napari's notebook_display imports lxml.html.clean, which +# split into a separate package in lxml >= 5.2 (else ImportError on Viewer()). +napari = ["napari[all]", "lxml-html-clean"] # workflow runs the Snakemake pipeline (per-tile SLURM jobs across GPUs). workflow = ["snakemake>=8", "snakemake-executor-plugin-slurm"] dev = ["pytest", "pytest-cov", "scikit-image", "psutil", "tqdm"]