From a645ab856798ff8da2394d55c33fac37bd7ba27e Mon Sep 17 00:00:00 2001 From: Philipp Mildenberger Date: Tue, 14 Jul 2026 00:57:39 +0200 Subject: [PATCH] now references the aux files in the "_extensions"-subfolder --- .../bioinfo-html/bioinfo-html-report-template.qmd | 5 ++--- .../bioinfo-revealjs-presentation-template.qmd | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/inst/extdata/_extensions/bioinfo-html/bioinfo-html-report-template.qmd b/inst/extdata/_extensions/bioinfo-html/bioinfo-html-report-template.qmd index 5771502..3cbb668 100644 --- a/inst/extdata/_extensions/bioinfo-html/bioinfo-html-report-template.qmd +++ b/inst/extdata/_extensions/bioinfo-html/bioinfo-html-report-template.qmd @@ -31,12 +31,11 @@ format: ## controls the aesthetics of the whole thing theme: - cosmo - ## if needed/desired: one can move that scss file and put it to toplevel - - ummz_theme.scss + - _extensions/bioinfo-html/ummz_theme.scss editor_options: chunk_output_type: console ## if needed/desired: one can move & rename that bib file and put it to toplevel -bibliography: references.bib +bibliography: _extensions/bioinfo-html/references.bib --- ```{r setup, include = FALSE} diff --git a/inst/extdata/_extensions/bioinfo-revealjs/bioinfo-revealjs-presentation-template.qmd b/inst/extdata/_extensions/bioinfo-revealjs/bioinfo-revealjs-presentation-template.qmd index db38d84..711ce85 100644 --- a/inst/extdata/_extensions/bioinfo-revealjs/bioinfo-revealjs-presentation-template.qmd +++ b/inst/extdata/_extensions/bioinfo-revealjs/bioinfo-revealjs-presentation-template.qmd @@ -15,7 +15,7 @@ format: revealjs: theme: - default - - ummz_reveal_theme.scss + - _extensions/bioinfo-revealjs/ummz_reveal_theme.scss embed-resources: true mainfont: "Atkinson Hyperlegible" # mainfont: "IBM Plex Sans"