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Preserve struct fields in make_mmcif #652

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Job	Run time
build (ubuntu-24.04, 3.9)	58s
build (ubuntu-24.04, 3.11)	53s
build (ubuntu-24.04, 3.14)	1m 34s
build (macos-latest, 3.10)	1m 1s
build (ubuntu-24.04, 3.8)	1m 2s
build (ubuntu-24.04, 3.12)	1m 1s
build (ubuntu-24.04, 3.10)	57s
build (ubuntu-24.04, 3.13)	56s
	8m 22s