comMS/pyproject.toml at main · holsam/comMS · GitHub

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[project]
name = "comms"
version = "3.0.0"
description = "A command line tool for comparative analysis of proteomic data"
readme = "README.md"
authors = [
    { name = "Sam Holland", email = "hol_sam@icloud.com" }
]
requires-python = ">=3.14"
dependencies = [
    "pandas>=3.0.2",
    "platformdirs>=4.9.6",
    "pyside6>=6.11.1",
    "rich>=15.0.0",
    "tomli-w>=1.2.0",
    "tqdm>=4.67.3",
    "typer>=0.24.1",
]

[dependency-groups]
dev = [
    "pytest>=9.0.3",
    "pytest-cov>=7.1.0",
]

[project.scripts]
comms = "comms.main:comms"

[build-system]
requires = ["uv_build>=0.11.2,<0.12.0"]
build-backend = "uv_build"

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "--tb=short -ra --cov=src/comms --cov-report=term-missing"
minversion = "7.0"
markers = [
    "crux: requires the Crux binary to be present under bin/ (auto-skipped if absent)",
    "trfp: requires ThermoRawFileParser.exe to be present under bin/ (auto-skipped if absent)",
]

[tool.coverage.run]
source = ["src"]
relative_files = true